ICEberg
I. Information of ICE
ICEberg ID952
Name ICEAcaTY.1 This is a predicted ICE derived from literature
OrganismAcidithiobacillus caldus s ATCC 51756
Size (bp)68856
GC content [Genome] (%)56.85
Insertion siteMet-CAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP005986 (complete ICE sequence in this genome)
Replicon-
Genome coordinates166955..235810 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEAcaTY.1 is not available.



The graph information of ICEAcaTY.1 components from CP005986
Complete gene list of ICEAcaTY.1 from CP005986
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Acaty_c0164163179..163442 [+], 264Prevent host death protein, Phd antitoxin
2Acaty_c0165163454..163795 [+], 342Death on curing protein, Doc toxin
3Acaty_c0167164355..165662 [-], 1308Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J
4Acaty_c0168165655..166434 [-], 780Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj
5Acaty_c0169166431..166877 [-], 447hypothetical protein
6Acaty_c0170166955..167542 [-], 588conjugal transfer protein precursorTraF, T4SS component 
7Acaty_c0171167539..167829 [-], 291hypothetical protein
8Acaty_c0172168051..168326 [-], 276hypothetical protein
9Acaty_c0173168326..169525 [-], 1200TraB family protein
10Acaty_c0174169666..169863 [-], 198hypothetical protein
11Acaty_c0175169860..170654 [-], 795General secretion pathway protein A
12Acaty_c0176170657..171970 [-], 1314Mobile element protein
13Acaty_c0177172104..172355 [-], 252hypothetical protein
14Acaty_c0178174957..175952 [+], 996ISGsu2, transposase
15Acaty_c0179177052..178047 [-], 996ISGsu2, transposase
16Acaty_c0180178186..179547 [-], 1362hypothetical protein
17Acaty_c0181180405..180602 [+], 198hypothetical protein
18Acaty_c0182181040..181195 [-], 156hypothetical protein
19Acaty_c0183181259..182143 [+], 885hypothetical protein
20Acaty_c0184182833..183738 [-], 906hypothetical protein
21Acaty_c0185184123..184290 [+], 168hypothetical protein
22Acaty_c0186184490..184612 [+], 123hypothetical protein
23Acaty_c0187186172..186426 [+], 255hypothetical proteinVirB1, T4SS component 
24Acaty_c0188186440..186565 [+], 126hypothetical protein
25Acaty_c0189187274..187948 [+], 675hypothetical protein
26Acaty_c0190187978..188901 [+], 924hypothetical protein
27Acaty_c0191188967..189626 [+], 660hypothetical protein
28Acaty_c0192189636..190175 [+], 540DedA protein
29Acaty_c0193191320..191721 [+], 402hypothetical protein
30Acaty_c0194192830..193789 [+], 960Glycosyl transferase, family 2
31Acaty_c0195193799..195439 [+], 1641glycosyl transferase family 39
32Acaty_c0196195690..196712 [+], 1023transposase, IS5 family
33Acaty_c0197196877..197170 [-], 294General substrate transporter
34Acaty_c0198197998..198954 [+], 957multicopper oxidase, type 3
35Acaty_c0199199164..199349 [-], 186hypothetical protein
36Acaty_c0200199425..200270 [-], 846transposase-like protein TnpA3
37Acaty_c0201201588..202625 [-], 1038Mobile element protein
38Acaty_c0202203298..203996 [-], 699Mobile element protein
39Acaty_c0203204366..204497 [-], 132hypothetical protein
40Acaty_c0204204801..206636 [+], 1836Potassium-transporting ATPase A chain
41Acaty_c0205206641..208701 [+], 2061Potassium-transporting ATPase B chain
42Acaty_c0206208712..209314 [+], 603Potassium-transporting ATPase C chain
43Acaty_c0207209806..210729 [+], 924hypothetical protein
44Acaty_c0208210831..211025 [+], 195hypothetical protein
45Acaty_c0209211167..211973 [+], 807Glutamate 5-kinase / RNA-binding C-terminal domain PUA
46Acaty_c0210212170..212313 [+], 144hypothetical protein
47Acaty_c0211212655..213554 [-], 900ISSod11, transposase
48Acaty_c0212213621..213806 [+], 186hypothetical protein
49Acaty_c0213213991..214233 [+], 243hypothetical protein
50Acaty_c0214214425..216002 [+], 1578Potassium-transporting ATPase A chain
51Acaty_c0215217037..217306 [+], 270hypothetical protein
52Acaty_c0216217635..217775 [+], 141hypothetical protein
53Acaty_c0217217820..218032 [+], 213hypothetical protein
54Acaty_c0218218369..221647 [-], 3279Helicase, SNF2/RAD54 family
55Acaty_c0219222429..222557 [+], 129HigA protein (antitoxin to HigB)
56Acaty_c0220223802..224113 [-], 312hypothetical protein
57Acaty_c0221224103..225665 [-], 1563transposase
58Acaty_c0222225674..226054 [-], 381hypothetical protein
59Acaty_c0223226057..226353 [-], 297hypothetical protein
60Acaty_c0224228164..228307 [+], 144DedA protein
61Acaty_c0225229024..229425 [+], 402hypothetical protein
62Acaty_c0226229858..230862 [-], 1005hypothetical protein
63Acaty_c0227230923..232197 [-], 1275Error-prone, lesion bypass DNA polymerase V (UmuC)
64Acaty_c0228232194..232694 [-], 501Error-prone repair protein UmuD
65Acaty_c0229232782..233279 [+], 498hypothetical protein
66Acaty_c0230233351..233905 [+], 555hypothetical protein
67Acaty_c0231234638..235810 [-], 1173Shufflon-specific DNA recombinaseIntegrase 
68Acaty_c0232236404..238488 [-], 2085O-antigen polymerase
69Acaty_c0233238588..240033 [-], 1446Mannose-1-phosphate guanylyltransferase (GDP)
70Acaty_c0234240030..240422 [-], 393GDP-mannose 4,6 dehydratase
71Acaty_c0235240409..240543 [-], 135hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins62Fasta
(1) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PubMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU