ICEberg
I. Information of ICE
ICEberg ID948
Name ICEAcaSM.3 This is a predicted ICE derived from literature
OrganismAcidithiobacillus caldus s SM-3
Size (bp)157,371
GC content [Genome] (%)55.86
Insertion siteArg-ACG
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_015850 (complete ICE sequence in this genome)
Replicon-
Genome coordinates2159400..2183632 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEAcaSM.3 is not available.



The graph information of ICEAcaSM.3 components from NC_015850
Complete gene list of ICEAcaSM.3 from NC_015850
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1ATC_RS105202155639..2155860 [+], 222hypothetical protein
2ATC_RS105252155857..2156399 [+], 543hypothetical protein
3ATC_RS105302156539..2156880 [+], 342hypothetical protein
4ATC_RS105352156884..2157876 [+], 993hypothetical protein
5ATC_RS105402158006..2159220 [-], 1215ISL3 family transposase
6ATC_RS105452159400..2160089 [+], 690hypothetical protein
7ATC_RS105502160147..2160365 [+], 219hypothetical protein
8ATC_RS165902160827..2161090 [+], 264hypothetical protein
9ATC_RS105552161233..2161427 [+], 195hypothetical protein
10ATC_RS105602161420..2161773 [-], 354hypothetical protein
11ATC_RS105652161980..2162174 [+], 195hypothetical protein
12ATC_RS105702162483..2162743 [+], 261hypothetical protein
13ATC_RS105752163163..2163522 [+], 360hypothetical protein
14ATC_RS105802163509..2163949 [+], 441hypothetical protein
15ATC_RS105852163921..2164949 [+], 1029ribonucleotide-diphosphate reductase subunit beta
16ATC_RS105902165112..2165306 [+], 195hypothetical protein
17ATC_RS105952165388..2165594 [-], 207hypothetical protein
18ATC_RS106002165884..2166285 [+], 402hypothetical protein
19ATC_RS160602166298..2167968 [+], 1671PRTRC system ParB family protein
20ATC_RS160652168112..2168546 [+], 435PRTRC system protein E
21ATC_RS106152168567..2168773 [+], 207PRTRC system protein C
22ATC_RS106202168867..2169934 [+], 1068PRTRC system protein F
23ATC_RS106252169931..2170653 [+], 723PRTRC system protein B
24ATC_RS106302170650..2171429 [+], 780PRTRC system ThiF family protein
25ATC_RS106352171654..2172793 [+], 1140SAM-dependent methyltransferase
26ATC_RS106402172793..2173416 [+], 624hypothetical protein
27ATC_RS106452173425..2176136 [+], 2712helicase
28ATC_RS106502176357..2176773 [+], 417hypothetical protein
29ATC_RS106552176792..2177223 [+], 432hypothetical protein
30ATC_RS106602177240..2177599 [+], 360hypothetical protein
31ATC_RS106652177617..2177832 [+], 216hypothetical protein
32ATC_RS106702177836..2179050 [+], 1215ISL3 family transposase
33ATC_RS106752179034..2179606 [-], 573hypothetical protein
34ATC_RS106802179841..2180548 [+], 708hypothetical protein
35ATC_RS106852180454..2181191 [+], 738hypothetical protein
36ATC_RS106902181201..2181710 [+], 510hypothetical protein
37ATC_RS106952181835..2183088 [+], 1254hypothetical protein
38ATC_RS107002183252..2183632 [+], 381hypothetical protein
39ATC_RS107102183954..2184784 [-], 831hypothetical protein
40ATC_RS107152184944..2186476 [+], 1533RND transporter
41ATC_RS107202186530..2187624 [+], 1095efflux RND transporter periplasmic adaptor subunit
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins33Fasta
(1) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PubMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU