ICEberg
I. Information of ICE
ICEberg ID946
Name ICEAcaSM.1 This is a predicted ICE derived from literature
OrganismAcidithiobacillus caldus s SM-1
Size (bp)104,341
GC content [Genome] (%)56.86
Insertion siteMet-CAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_015850 (complete ICE sequence in this genome)
Replicon-
Genome coordinates115486..212210 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEAcaSM.1 is not available.



The graph information of ICEAcaSM.1 components from NC_015850
Complete gene list of ICEAcaSM.1 from NC_015850
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1ATC_RS00500110888..111433 [-], 546conjugal transfer protein TraF
2ATC_RS00505111472..111762 [-], 291hypothetical protein
3ATC_RS00510111763..111987 [-], 225hypothetical protein
4ATC_RS00515111984..112259 [-], 276hypothetical protein
5ATC_RS00520112259..113458 [-], 1200conjugal transfer protein TraB
6ATC_RS00525113868..114188 [-], 321hypothetical protein
7ATC_RS00530115486..116442 [-], 957IS5 family transposase
8ATC_RS00535116936..117391 [-], 456hypothetical protein
9ATC_RS00540117452..118813 [-], 1362hypothetical protein
10ATC_RS00545118999..119478 [+], 480DUF302 domain-containing protein
11ATC_RS00550119572..120066 [-], 495hypothetical protein
12ATC_RS00555120196..120750 [-], 555FUSC family protein
13ATC_RS00560120787..121692 [-], 906DUF2236 domain-containing protein
14ATC_RS16125121948..122244 [+], 297hypothetical protein
15ATC_RS00570122225..122566 [+], 342hypothetical protein
16ATC_RS16130123108..123344 [+], 237hypothetical protein
17ATC_RS15910123790..124380 [+], 591lytic transglycosylaseVirB1, T4SS component 
18ATC_RS16135124371..124595 [-], 225hypothetical protein
19ATC_RS00580124608..124907 [-], 300hypothetical protein
20ATC_RS00585125228..125902 [+], 675hypothetical protein
21ATC_RS16140126145..126480 [+], 336hypothetical protein
22ATC_RS00595127311..127754 [+], 444DedA family protein
23ATC_RS00600127934..128149 [-], 216hypothetical protein
24ATC_RS00605128509..129300 [+], 792hypothetical protein
25ATC_RS16145129327..129647 [+], 321hypothetical protein
26ATC_RS00610130409..131368 [+], 960glycosyltransferase
27ATC_RS00615131378..133018 [+], 1641glycosyltransferase family 39 protein
28ATC_RS00620133269..134291 [+], 1023IS5 family transposase
29ATC_RS00625134849..135805 [+], 957hypothetical protein
30ATC_RS00635136276..137121 [-], 846IS5 family transposase
31ATC_RS16150141217..141348 [-], 132hypothetical protein
32ATC_RS00660141638..141730 [+], 93K(+)-transporting ATPase subunit F
33ATC_RS00665141727..143487 [+], 1761potassium-transporting ATPase subunit KdpA
34ATC_RS00670143492..145552 [+], 2061K(+)-transporting ATPase subunit B
35ATC_RS00675145563..146165 [+], 603potassium-transporting ATPase subunit KdpC
36ATC_RS00680146412..147593 [+], 1182porin
37ATC_RS00685147684..147878 [+], 195hypothetical protein
38ATC_RS00690147924..148826 [+], 903glutamate 5-kinase
39ATC_RS16155148864..149166 [+], 303hypothetical protein
40ATC_RS00695149225..149674 [+], 450hypothetical protein
41ATC_RS00700149859..150101 [+], 243hypothetical protein
42ATC_RS00705150293..151870 [+], 1578potassium-transporting ATPase subunit A
43ATC_RS00710151949..152905 [+], 957IS5 family transposase
44ATC_RS00715153068..153814 [+], 747DNA-binding response regulator
45ATC_RS00720154058..154327 [+], 270transcriptional regulator
46ATC_RS00725154772..155029 [+], 258hypothetical protein
47ATC_RS00730155093..155278 [+], 186hypothetical protein
48ATC_RS00735155356..156477 [-], 1122DNA polymerase IV
49ATC_RS00740157025..157339 [+], 315hypothetical protein
50ATC_RS00745158045..159100 [+], 1056IS5 family transposase
51ATC_RS00750159381..159866 [-], 486GNAT family N-acetyltransferase
52ATC_RS00755159869..160579 [-], 711DJ-1/PfpI family protein
53ATC_RS00760160576..161235 [-], 660FMN-binding negative transcriptional regulator
54ATC_RS00765161927..162685 [-], 759SDR family NAD(P)-dependent oxidoreductase
55ATC_RS00770162736..163326 [-], 591TetR/AcrR family transcriptional regulator
56ATC_RS00775163419..163883 [+], 465nuclear transport factor 2 family protein
57ATC_RS00780164052..164723 [+], 672conjugal transfer proteinTrbF, T4SS component 
58ATC_RS00785164735..165907 [+], 1173conjugal transfer proteinTrbG, T4SS component 
59ATC_RS00790165904..166824 [+], 921hypothetical protein
60ATC_RS00795166821..168137 [+], 1317conjugal transfer protein TrbITrbI, T4SS component 
61ATC_RS00800168134..168406 [+], 273hypothetical protein
62ATC_RS00805168432..168755 [-], 324type II toxin-antitoxin system PemK/MazF family toxin
63ATC_RS00810168755..168979 [-], 225DUF3018 family protein
64ATC_RS00815169180..171198 [+], 2019DNA topoisomerase III
65ATC_RS00820171515..172081 [+], 567peptidase M56TrbN, T4SS component 
66ATC_RS00825172103..174457 [+], 2355conjugal transfer protein TraGVirD4, T4SS component 
67ATC_RS00830174679..175734 [-], 1056IS5 family transposase
68ATC_RS00835175888..177282 [+], 1395IS1182 family transposase
69ATC_RS00840177814..179028 [-], 1215ISL3 family transposase
70ATC_RS00845179236..179625 [+], 390EmrB/QacA subfamily drug resistance transporter
71ATC_RS00855180941..181840 [-], 900IS1595 family transposase
72ATC_RS00870183083..183352 [-], 270hypothetical protein
73ATC_RS00880183883..184905 [-], 1023IS5 family transposase
74ATC_RS16165184962..185132 [+], 171DUF2892 domain-containing protein
75ATC_RS16170185831..186079 [-], 249hypothetical protein
76ATC_RS00895186371..187342 [+], 972cytochrome ubiquinol oxidase subunit II
77ATC_RS00900187344..189491 [+], 2148cytochrome o ubiquinol oxidase
78ATC_RS00905189558..190196 [+], 639cytochrome o ubiquinol oxidase
79ATC_RS16175190376..190564 [+], 189hypothetical protein
80ATC_RS00915190754..191509 [+], 756hypothetical protein
81ATC_RS00920191534..192469 [+], 936protoheme IX farnesyltransferase
82ATC_RS00925192456..192827 [+], 372hypothetical protein
83ATC_RS00930193186..194400 [+], 1215ISL3 family transposase
84ATC_RS00935194610..195317 [+], 708PilZ domain-containing protein
85ATC_RS00940195372..197417 [+], 2046GGDEF domain-containing protein
86ATC_RS16180197789..197965 [+], 177hypothetical protein
87ATC_RS00945198188..198598 [+], 411chemotaxis protein CheYVF 
88ATC_RS00950198595..199080 [+], 486hypothetical protein
89ATC_RS00955199083..201062 [+], 1980chemotaxis protein CheA
90ATC_RS00960201062..201661 [+], 600hypothetical protein
91ATC_RS00965201658..202404 [+], 747MBL fold metallo-hydrolase
92ATC_RS00970202514..203527 [+], 1014hypothetical protein
93ATC_RS00975203605..204570 [+], 966chemotaxis protein CheV
94ATC_RS15915204567..205799 [+], 1233PAS domain S-box protein
95ATC_RS00985205876..207948 [+], 2073EAL domain-containing protein
96ATC_RS00990208459..209622 [-], 1164integraseIntegrase 
97ATC_RS00995209893..211416 [+], 1524IS21 family transposase
98ATC_RS01000211425..212210 [+], 786ATP-binding protein
99ATC_RS01005212841..214916 [-], 2076O-antigen ligase domain-containing protein
100ATC_RS01010215025..216470 [-], 1446mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins92Fasta
(1) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PubMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU