ICEberg
I. Information of ICE
ICEberg ID945
Name ICE6441 This is a predicted ICE derived from literature
OrganismPseudomonas aeruginosa FFUP_PS_CB5
Size (bp)88502
GC content [Genome] (%)64.01
Insertion site-
FunctionAntibiotic resistance genes: bla(VIM-2)
Species that ICE can be transferred to-
Nucleotide SequenceMF168946 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..88502 
Putative oriT region -
Putative relaxase coordinates: 81783..83645;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE6441 is not available.



The graph information of ICE6441 components from MF168946
Complete gene list of ICE6441 from MF168946
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-891..1946 [-], 1056portal protein
2-1943..3727 [-], 1785putative DNA-dependent ATPase terminase subunit
3-3862..4683 [+], 822capsid protein
4-4719..5735 [+], 1017capsid protein
5-5741..6442 [+], 702terminase endonuclease subunit
6-6546..7007 [+], 462GPL superfamily protein
7-7007..7219 [+], 213tail protein
8-7244..7597 [+], 354membrane protein
9-7599..7871 [+], 273holin family protein
10-7868..8674 [+], 807peptidoglycan-binding protein
11-8671..8913 [+], 243hypothetical protein
12-8910..9371 [+], 462peptidase
13-9452..9988 [+], 537tail protein
14-9981..10439 [+], 459virion morphogenesis protein
15-10509..11081 [+], 573baseplate assembly protein
16-11078..11422 [+], 345baseplate assembly protein
17-11419..12336 [+], 918baseplate assembly protein
18-12333..12950 [+], 618tail protein
19-12947..14764 [+], 1818putative tail fiber protein
20-14774..15208 [+], 435tail protein
21-15309..16484 [+], 1176tail protein
22-16541..17056 [+], 516major tail tube protein
23-17111..17440 [+], 330tail assembly protein
24-17449..17568 [+], 120tail protein
25-17558..20317 [+], 2760tail tape measure protein
26-20326..20763 [+], 438oxidoreductase
27-20760..22031 [+], 1272late control protein
28-23199..23399 [+], 201hypothetical protein
29-23429..23932 [+], 504hypothetical protein
30-23971..24207 [+], 237transcriptional regulator
31-24204..24563 [+], 360hypothetical protein
32-24631..24864 [+], 234hypothetical protein
33-24877..27600 [+], 2724toprim domain protein
34-27654..27794 [+], 141hypothetical protein
35-27847..28578 [+], 732hypothetical protein
36-28580..28930 [+], 351hypothetical protein
37-29000..29287 [+], 288hypothetical protein
38-29284..30516 [+], 1233phosphoadenosine phosphosulfate reductase
39-30527..30703 [+], 177hypothetical protein
40-30700..31326 [+], 627hypothetical protein
41-31323..32180 [+], 858methyltransferase
42-32168..32410 [+], 243hypothetical protein
43-32403..32606 [+], 204hypothetical protein
44-32599..32802 [+], 204AlpA family regulatory protein
45-32809..34011 [-], 1203integrase
46-34465..36393 [+], 1929integraseIntegrase 
47-36945..37700 [+], 756hypothetical protein
48-37819..38031 [+], 213transcriptional regulator
49-38074..38949 [+], 876cobyrinic acid a,c-diamide synthase
50-38933..39181 [+], 249hypothetical protein
51-39174..40802 [+], 1629putative ParB
52-40818..41378 [+], 561hypothetical protein
53-41382..42626 [+], 1245hypothetical protein
54-42944..43729 [+], 786hypothetical protein
55-43726..44253 [+], 528hypothetical protein
56-44327..44767 [+], 441single-stranded DNA-binding protein
57-45037..47061 [+], 2025DNA topoisomerase III
58-47586..47831 [+], 246hypothetical protein
59-48160..48372 [+], 213hypothetical protein
60-48394..48786 [+], 393hypothetical protein
61-48999..49736 [+], 738hypothetical protein
62-49831..50109 [+], 279hypothetical protein
63-50389..51201 [+], 813hypothetical protein
64-51578..52492 [+], 915hypothetical protein
65-52547..53245 [+], 699hypothetical protein
66-53340..53741 [+], 402hypothetical protein
67-53824..54474 [+], 651hypothetical protein
68-54539..55660 [+], 1122hypothetical protein
69-55761..56072 [+], 312hypothetical protein
70-56210..58489 [+], 2280DEAD/DEAH box helicase
71-58723..59301 [+], 579Conj_PilL superfamily proteinTfc2, T4SS component 
72-59298..59939 [+], 642hypothetical proteinTfc2, T4SS component 
73-59954..60691 [+], 738hypothetical proteinTfc3, T4SS component 
74-60691..61278 [+], 588lytic transglycosylaseTfc4, T4SS component 
75-61275..61823 [+], 549hypothetical proteinTfc5, T4SS component 
76-61828..64014 [+], 2187PFGI-1 class conjugative coupling factorTfc6, T4SS component 
77-64011..64760 [+], 750membrane proteinTfc8, T4SS component 
78-64761..66131 [-], 1371hypothetical protein
79-66293..66673 [+], 381hypothetical proteinTfc9, T4SS component 
80-66670..66903 [+], 234hypothetical protein
81-66920..67279 [+], 360membrane proteinTfc10, T4SS component 
82-67292..67702 [+], 411conjugative transfer region proteinTfc11, T4SS component 
83-67699..68388 [+], 690hypothetical proteinTfc12, T4SS component 
84-68385..69317 [+], 933hypothetical proteinTfc13, T4SS component 
85-69307..70725 [+], 1419hypothetical proteinTfc14, T4SS component 
86-70706..71146 [+], 441conjugal transfer proteinTfc15, T4SS component 
87-71146..74016 [+], 2871conjugative transfer ATPaseTfc16, T4SS component 
88-74059..74784 [+], 726DSBA oxidoreductase
89-74971..75465 [+], 495DNA repair protein
90-75609..76055 [+], 447hypothetical proteinTfc24, T4SS component 
91-76052..76999 [+], 948TraU proteinTfc23, T4SS component 
92-77010..78404 [+], 1395hypothetical proteinTfc22, T4SS component 
93-78401..78760 [+], 360hypothetical protein
94-78776..80299 [+], 1524conjugal transfer proteinTfc19, T4SS component 
95-80306..80668 [-], 363hypothetical protein
96-80696..81154 [-], 459toxin
97-81154..81471 [-], 318AbrB family transcriptional regulator
98-81783..83645 [+], 1863relaxaseRelaxase, MOBH Family
99-83656..84237 [-], 582hypothetical protein
100-84806..87691 [-], 2886transposase
101-87840..90182 [-], 2343transposase
102-90238..91095 [-], 858integrase
103-91092..91424 [-], 333transposase
104-91457..91891 [-], 435transposase
105-91894..92454 [-], 561resolvase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins100Fasta
(1) Botelho J; Grosso F; Quinteira S; Brilhante M; Ramos H; Peixe L (2018). Two decades of blaVIM-2-producing Pseudomonas aeruginosa dissemination: an interplay between mobile genetic elements and successful clones. J Antimicrob Chemother. 73(4):873-882. [PubMed:29373674] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU