ICEberg
I. Information of ICE
ICEberg ID941
Name CTnPi4 This is a predicted ICE derived from literature
OrganismPrevotella intermedia s 17
Size (bp)58645
GC content [Genome] (%)100
Insertion siteTTTTCNNNNAAAA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_017861 (complete ICE sequence in this genome)
Replicon-
Genome coordinates786441..845085 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of CTnPi4 is not available.



The graph information of CTnPi4 components from NC_017861
Complete gene list of CTnPi4 from NC_017861
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1PIN17_RS05520782067..784652 [+], 2586hypothetical protein
2PIN17_RS05525784769..786136 [-], 1368phospholipase
3PIN17_RS114302119695..105 [+], -2119589hypothetical protein
4PIN17_RS05530786811..788046 [+], 1236site-specific integrase
5PIN17_RS05535788062..788424 [+], 363hypothetical protein
6PIN17_RS05540788474..788776 [-], 303DNA-binding protein
7PIN17_RS05545788814..789092 [-], 279DNA-binding protein
8PIN17_RS05550789314..789667 [+], 354DNA-binding protein
9PIN17_RS05555789651..789971 [+], 321DNA-binding protein
10PIN17_RS05560790060..795525 [-], 5466DNA methylase
11PIN17_RS05565795512..795943 [-], 432DUF1896 domain-containing protein
12PIN17_RS05570796081..798210 [-], 2130type IA DNA topoisomerase
13PIN17_RS05575798245..799639 [-], 1395DUF3945 domain-containing protein
14PIN17_RS05580799814..801511 [-], 1698ABC transporter ATP-binding protein
15PIN17_RS05585801514..803259 [-], 1746ABC transporter ATP-binding protein
16PIN17_RS05590803459..805834 [+], 2376TonB-dependent receptor
17PIN17_RS05595805853..807034 [+], 1182hypothetical protein
18PIN17_RS05600807160..808140 [+], 981AraC family transcriptional regulator
19PIN17_RS05605808229..809524 [+], 1296hypothetical protein
20PIN17_RS05625812642..813544 [-], 903hypothetical protein
21PIN17_RS05630813686..814711 [+], 1026sensor histidine kinase
22PIN17_RS05635814716..815456 [+], 741DNA-binding response regulator
23PIN17_RS05640815586..816065 [+], 480hypothetical protein
24PIN17_RS05645816211..816972 [+], 762outer membrane lipoprotein-sorting protein
25PIN17_RS05650817084..817317 [+], 234hypothetical protein
26PIN17_RS05655817340..817666 [+], 327RteC protein
27PIN17_RS11970817711..817893 [-], 183DUF1016 family protein
28PIN17_RS05665818456..820465 [-], 2010conjugal transfer protein TraG
29PIN17_RS05670820650..821885 [-], 1236relaxase
30PIN17_RS05675821870..822226 [-], 357hypothetical protein
31PIN17_RS05685823080..823862 [+], 783ParA family protein
32PIN17_RS05690823846..824277 [+], 432DUF3408 domain-containing protein
33PIN17_RS05695824303..824656 [+], 354DUF3408 domain-containing protein
34PIN17_RS05700824653..825243 [+], 591hypothetical protein
35PIN17_RS05705825273..826013 [+], 741ParA family protein
36PIN17_RS05710826001..826603 [+], 603hypothetical protein
37PIN17_RS11980826751..827050 [+], 300DUF4134 domain-containing protein
38PIN17_RS11985827055..827432 [+], 378DUF4133 domain-containing protein
39PIN17_RS05720827429..829915 [+], 2487TraG family conjugative transposon ATPase
40PIN17_RS05725830062..830673 [+], 612DUF4141 domain-containing protein
41PIN17_RS05730830676..831752 [+], 1077conjugative transposon protein TraJ
42PIN17_RS05735831772..832395 [+], 624conjugative transposon protein TraK
43PIN17_RS05740832392..832724 [+], 333DUF3989 domain-containing protein
44PIN17_RS05745832675..834042 [+], 1368conjugative transposon protein TraM
45PIN17_RS05750834081..835001 [+], 921conjugative transposon protein TraN
46PIN17_RS05755835003..835587 [+], 585conjugal transfer protein TraO
47PIN17_RS05760835587..836432 [+], 846DNA primase
48PIN17_RS05765836460..836921 [+], 462DUF3872 domain-containing protein
49PIN17_RS05770836905..837420 [+], 516lysozyme
50PIN17_RS05775837542..839110 [+], 1569ATP-dependent endonuclease
51PIN17_RS05780839095..840123 [+], 1029helicase UvrD
52PIN17_RS05785840325..840555 [-], 231hypothetical protein
53PIN17_RS05790840560..840814 [-], 255hypothetical protein
54PIN17_RS05795840842..842116 [-], 1275PcfJ-like protein
55PIN17_RS05800842133..842663 [-], 531antirestriction protein ArdA
56PIN17_RS05805842684..843100 [-], 417PcfK-like protein
57PIN17_RS05815843705..844001 [-], 297hypothetical protein
58PIN17_RS05820844013..844231 [-], 219hypothetical protein
59PIN17_RS05825844244..844453 [-], 210hypothetical protein
60PIN17_RS11990844623..844745 [-], 123hypothetical protein
61PIN17_RS11995844774..844989 [+], 216hypothetical protein
62PIN17_RS05830845258..846508 [-], 1251insulinase family protein
63PIN17_RS05835846591..847787 [+], 1197FprA family A-type flavoprotein
64PIN17_RS05840847792..848922 [+], 1131membrane protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins59Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PubMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU