ICEberg
I. Information of ICE
ICEberg ID940
Name CTnPi3 This is a predicted ICE derived from literature
OrganismPrevotella intermedia s OMA14
Size (bp)82688
GC content [Genome] (%)46.02
Insertion siteGCGGTGCGTACGA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP014597 (complete ICE sequence in this genome)
Replicon-
Genome coordinates454604..537291 
Putative oriT region -
Putative relaxase coordinates: 515845..517125; Locus tag: PIOMA14_I_0480;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnPi3 is not available.



The graph information of CTnPi3 components from AP014597
Complete gene list of CTnPi3 from AP014597
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1PIOMA14_I_0416450068..450550 [+], 483hypothetical protein
2PIOMA14_I_0417450617..451435 [+], 819conserved hypothetical protein
3PIOMA14_I_0418451508..452149 [-], 642conserved hypothetical protein
4PIOMA14_I_0419452435..452839 [+], 405conserved hypothetical protein with Rhodanese-like domain
5PIOMA14_I_0420453234..453734 [+], 501probable phosphotyrosine protein phosphatase
6PIOMA14_I_0421453747..454532 [+], 786conserved hypothetical protein with DUF328 domain
7PIOMA14_I_0422455020..455499 [+], 480conserved hypothetical protein
8PIOMA14_I_0423455501..455884 [+], 384conserved hypothetical protein
9PIOMA14_I_0424455881..457947 [+], 2067conserved hypothetical protein with AAA domain
10PIOMA14_I_0425457935..458243 [+], 309conserved hypothetical protein with helix-tune-helix domain
11PIOMA14_I_0426458384..459385 [+], 1002conserved hypothetical protein with DUF2186 domain
12PIOMA14_I_0427459363..460217 [+], 855conserved hypothetical protein with DUF1814 domain
13PIOMA14_I_0428460198..460833 [+], 636conserved hypothetical protein with protein phosphatase domain
14PIOMA14_I_0429460920..462512 [-], 1593conserved hypothetical protein with helicase C-terminal domain
15PIOMA14_I_0430462805..464025 [+], 1221bacteriophage integrase
16PIOMA14_I_0431464030..465298 [+], 1269bacteriophage integrase
17PIOMA14_I_0432465351..465836 [+], 486conserved hypothetical protein with DUF1896 domain
18PIOMA14_I_0433465861..466112 [+], 252conserved hypothetical protein
19PIOMA14_I_0434466499..466768 [+], 270conserved hypothetical protein with helix-turn-helix domain
20PIOMA14_I_0435466772..467086 [+], 315conserved hypothetical protein with helix-turn-helix domain
21PIOMA14_I_0436467074..467580 [+], 507conserved hypothetical protein with DUF3408 domain
22PIOMA14_I_0437467565..467777 [+], 213hypothetical protein
23PIOMA14_I_0438467774..468193 [+], 420conserved hypothetical protein
24PIOMA14_I_0439468251..469000 [+], 750conserved hypothetical protein with type I restriction modification DNA specificity domain
25PIOMA14_I_0440468997..469989 [+], 993bacteriophage integraseIntegrase 
26PIOMA14_I_0441470066..471346 [+], 1281conserved hypothetical protein with type I restriction modification DNA specificity domain
27PIOMA14_I_0442471270..471899 [-], 630conserved hypothetical protein with type I restriction modification DNA specificity domain
28PIOMA14_I_0443471889..472905 [-], 1017conserved hypothetical protein with AAA domain
29PIOMA14_I_0444472908..474062 [-], 1155conserved hypothetical protein with DUF1016 domain
30PIOMA14_I_0445474071..475714 [-], 1644type I site-specific restriction-modification system methyltransferase
31PIOMA14_I_0446475719..478907 [-], 3189type I site-specific restriction-modification system deoxyribonuclease
32PIOMA14_I_0447478918..479112 [-], 195hypothetical protein with helix-turn-helix domain
33PIOMA14_I_0448479419..479553 [-], 135hypothetical protein
34PIOMA14_I_0449480120..480779 [+], 660putative transcriptional regulator
35PIOMA14_I_0450480754..481017 [+], 264hypothetical protein
36PIOMA14_I_0451481044..483434 [+], 2391conserved hypothetical protein with Can_B_2 domain
37PIOMA14_I_0452483503..484600 [+], 1098partial ABC transporter ATP-binding protein
38PIOMA14_I_0453484649..485353 [+], 705partial ABC transporter ATP-binding protein
39PIOMA14_I_0454485350..485688 [+], 339putative partial ABC transporter ATP-binding protein
40PIOMA14_I_0455485690..486169 [+], 480conserved hypothetical protein
41PIOMA14_I_0456486164..486607 [-], 444conserved hypothetical protein
42PIOMA14_I_0457486818..487444 [-], 627conserved hypothetical protein with DUF3408 domain
43PIOMA14_I_0458487447..487755 [-], 309conserved hypothetical protein with helix-turn-helix domain
44PIOMA14_I_0459487779..488045 [-], 267conserved hypothetical protein
45PIOMA14_I_0460488210..488296 [+], 87conserved hypothetical protein
46PIOMA14_I_0461488363..488518 [+], 156conserved hypothetical protein
47PIOMA14_I_0462488602..489081 [-], 480conserved hypothetical protein withDUF1896 domain
48PIOMA14_I_0463489135..490418 [-], 1284integrase
49PIOMA14_I_0464490431..491684 [-], 1254integrase
50PIOMA14_I_0465491730..491822 [+], 93hypothetical protein
51PIOMA14_I_0466491942..496441 [-], 4500putative DNA methylase
52PIOMA14_I_0467496535..498619 [-], 2085DNA topoisomerase
53PIOMA14_I_0468498641..500044 [-], 1404conserved hypothetical protein with DUF3945 domain
54PIOMA14_I_0469500230..501258 [-], 1029LuxR family bacterial regulatory protein
55PIOMA14_I_0470501597..501788 [+], 192hypothetical protein
56PIOMA14_I_0471501808..503547 [+], 1740TPR domain protein
57PIOMA14_I_0472503594..503938 [+], 345hypothetical protein
58PIOMA14_I_0473504136..504327 [+], 192hypothetical protein
59PIOMA14_I_0474504273..505088 [+], 816conserved hypothetical protein
60PIOMA14_I_0475505119..508772 [+], 3654conserved hypothetical protein
61PIOMA14_I_0476509228..512938 [+], 3711conserved hypothetical protein
62PIOMA14_I_0477513077..513286 [+], 210hypothetical protein
63PIOMA14_I_0478513631..513765 [+], 135hypothetical protein
64PIOMA14_I_0479513747..515750 [-], 2004coupling protein T4CPT4CP 
65PIOMA14_I_0480515845..517125 [-], 1281probable relaxaseRelaxase, MOBP Family
66PIOMA14_I_0481517122..517541 [-], 420conserved hypothetical protein
67PIOMA14_I_0482517709..517891 [+], 183hypothetical protein
68traA518005..518928 [+], 924conjugative transposon protein TraA
69PIOMA14_I_0484518915..519388 [+], 474conserved hypothetical protein with DUF3408 domain
70traC519395..519871 [+], 477conjugative transposon protein TraC
71PIOMA14_I_0486519874..520671 [+], 798conserved hypothetical protein
72traE520813..521115 [+], 303probable conjugative transposon protein TraE
73traF521120..521455 [+], 336probable conjugative transposon protein TraF
74traG521452..523965 [+], 2514conjugative transposon protein TraG
75traI524188..524820 [+], 633conjugative transposon protein TraI
76traJ524861..525898 [+], 1038conjugative transposon protein TraJ
77traK525950..526573 [+], 624conjugative transposon protein TraK
78PIOMA14_I_0493526578..526880 [+], 303conserved hypothetical protein
79traM526873..528141 [+], 1269conjugative transposon protein TraM
80traN528153..529139 [+], 987conjugative transposon protein TraN
81traO529133..529726 [+], 594conjugative transposon protein TraO
82traQ529740..530225 [+], 486putative conjugative transposon protein TraQ
83PIOMA14_I_0498530212..530721 [+], 510putative lysozyme
84PIOMA14_I_0499530834..531553 [+], 720conserved hypothetical protein with NYN domain
85PIOMA14_I_0500531550..531726 [+], 177hypothetical protein
86PIOMA14_I_0501531714..531938 [-], 225hypothetical protein
87PIOMA14_I_0502531943..532197 [-], 255hypothetical protein
88PIOMA14_I_0503532230..533504 [-], 1275conserved hypothetical protein with PcfJ domain
89PIOMA14_I_0504533509..533919 [-], 411conserved hypothetical protein with PcfK domain
90PIOMA14_I_0505533926..534357 [-], 432conserved hypothetical protein
91PIOMA14_I_0506534710..535057 [-], 348hypothetical protein
92PIOMA14_I_0507535198..535662 [-], 465conserved hypothetical protein with DUF1896 domain
93PIOMA14_I_0508535700..536923 [-], 1224integrase
94PIOMA14_I_0509537542..538051 [-], 510acetyltransferase GNAT family
95PIOMA14_I_0510538051..539247 [-], 1197glycosyl transferase family 2
96PIOMA14_I_0511539354..539416 [+], 63conserved hypothetical protein
97PIOMA14_I_0512539416..539523 [+], 108conserved hypothetical protein
98PIOMA14_I_0513539713..540321 [-], 609recombination protein RecR
99PIOMA14_I_0514540346..540840 [-], 495conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins87Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PubMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU