ICEberg
I. Information of ICE
ICEberg ID939
Name CTnPi2 This is a predicted ICE derived from literature
OrganismPrevotella intermedia s OMA14
Size (bp)59712
GC content [Genome] (%)46.8
Insertion siteGGAGAGAGAGG
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP014598 (complete ICE sequence in this genome)
Replicon-
Genome coordinates293340..353051 
Putative oriT region -
Putative relaxase coordinates: 332023..333303; Locus tag: PIOMA14_II_0265;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnPi2 is not available.



The graph information of CTnPi2 components from AP014598
Complete gene list of CTnPi2 from AP014598
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1PIOMA14_II_0225290847..292076 [+], 1230integrase
2PIOMA14_II_0226292105..293382 [+], 1278integrase
3PIOMA14_II_0227293466..293738 [-], 273hypothetical protein
4PIOMA14_II_0228293761..293844 [-], 84hypothetical protein
5PIOMA14_II_0229293845..294180 [+], 336conserved hypothetical protein with HTH31 domain
6PIOMA14_II_0230294187..294561 [+], 375conserved hypothetical protein
7PIOMA14_II_0231294565..296625 [+], 2061conserved hypothetical protein with AAA25 domain
8PIOMA14_II_0232296613..296921 [+], 309conserved hypothetical protein with HTH17 domain
9PIOMA14_II_0233297018..297728 [+], 711conserved hypothetical protein
10PIOMA14_II_0234297725..298786 [+], 1062conserved hypothetical protein with DUF1814 domain
11PIOMA14_II_0235298866..300464 [-], 1599conserved hypothetical protein
12PIOMA14_II_0236300715..300798 [-], 84conserved hypothetical protein
13PIOMA14_II_0237301031..301690 [+], 660putative TetR family transcriptional regulator
14PIOMA14_II_0238301665..301928 [+], 264hypothetical protein
15PIOMA14_II_0239301937..304345 [+], 2409probable TonB-dependent receptor
16PIOMA14_II_0240304414..305511 [+], 1098partial ABC transporter ATP-binding protein
17PIOMA14_II_0241305560..306264 [+], 705partial ABC transporter ATP-binding protein
18PIOMA14_II_0242306261..306599 [+], 339partial putative ABC transporter ATP-binding protein
19PIOMA14_II_0243306589..307080 [+], 492conserved hypothetical protein
20PIOMA14_II_0244307075..307518 [-], 444conserved hypothetical protein
21PIOMA14_II_0245307729..308355 [-], 627conserved hypothetical protein with DUF3408 domain
22PIOMA14_II_0246308358..308666 [-], 309conserved hypothetical protein with HTH17 domain
23PIOMA14_II_0247308690..308956 [-], 267conserved hypothetical protein
24PIOMA14_II_0248309300..309482 [-], 183conserved hypothetical protein
25PIOMA14_II_0249309513..309992 [-], 480conserved hypothetical protein with DUF1896 domain
26PIOMA14_II_0250310046..311329 [-], 1284integraseIntegrase 
27PIOMA14_II_0251311342..312595 [-], 1254integrase
28PIOMA14_II_0252312853..317397 [-], 4545DNA methylase
29PIOMA14_II_0253317490..319565 [-], 2076DNA topoisomerase
30PIOMA14_II_0254319586..320989 [-], 1404conserved hypothetical protein with DUF3945 domain
31PIOMA14_II_0255321021..321104 [-], 84conserved hypothetical proteinin
32PIOMA14_II_0256321175..322203 [-], 1029hypothetical protein
33PIOMA14_II_0257322215..322343 [-], 129conserved hypothetical protein
34PIOMA14_II_0258322542..322823 [+], 282hypothetical protein
35PIOMA14_II_0259322874..325480 [+], 2607conserved hypothetical protein
36PIOMA14_II_0260325605..325715 [+], 111hypothetical protein
37PIOMA14_II_0261325746..329426 [+], 3681conserved hypothetical protein
38PIOMA14_II_0262329513..329719 [+], 207hypothetical protein
39PIOMA14_II_0263329705..329887 [-], 183hypothetical protein
40PIOMA14_II_0264329903..331906 [-], 2004coupling protein T4CPT4CP 
41PIOMA14_II_0265332023..333303 [-], 1281probable relaxaseRelaxase, MOBP Family
42PIOMA14_II_0266333300..333719 [-], 420conserved hypothetical protein
43PIOMA14_II_0267333727..333888 [-], 162conserved hypothetical protein
44PIOMA14_II_0268333910..333987 [-], 78hypothetical protein
45traA334303..335106 [+], 804putative conjugative transposon protein TraA
46PIOMA14_II_0270335093..335566 [+], 474probable conjugative transposon protein TraC
47PIOMA14_II_0271335573..336049 [+], 477probable conjugative transposon protein TraC
48PIOMA14_II_0272336052..336849 [+], 798conserved hypothetical protein
49traE336991..337293 [+], 303putative conjugative transposon protein TraE
50traF337298..337633 [+], 336putative conjugative transposon protein TraF
51traG337630..340143 [+], 2514conjugative transposon protein TraG
52traI340366..340998 [+], 633conjugative transposon protein TraI
53traJ341051..342088 [+], 1038conjugative transposon protein TraJ
54traK342139..342762 [+], 624conjugative transposon protein TraK
55PIOMA14_II_0279342767..343069 [+], 303conserved hypothetical protein
56traM343011..344330 [+], 1320conjugative transposon protein TraM
57traN344379..345329 [+], 951conjugative transposon protein TraN
58traO345323..345913 [+], 591putative conjugative transposon protein TraO
59traQ345926..346381 [+], 456putative conjugative transposon protein TraQ
60PIOMA14_II_0284346393..346899 [+], 507putative lysozyme
61PIOMA14_II_0285346977..347294 [+], 318hypothetical protein
62PIOMA14_II_0286347463..347678 [-], 216hypothetical protein
63PIOMA14_II_0287347690..347944 [-], 255hypothetical protein
64PIOMA14_II_0288347970..349244 [-], 1275conserved hypothetical protein with PcfJ domain
65PIOMA14_II_0289349249..349668 [-], 420conserved hypothetical protein with PcfK domain
66PIOMA14_II_0290349674..350135 [-], 462conserved hypothetical protein
67PIOMA14_II_0291350489..350836 [-], 348conserved hypothetical protein
68PIOMA14_II_0292351002..351469 [-], 468conserved hypothetical protein with DUF1896 domain
69PIOMA14_II_0293351495..352727 [-], 1233integrase
70PIOMA14_II_0294352798..352911 [+], 114hypothetical protein
71PIOMA14_II_0295353098..353514 [+], 417conserved hypothetical protein
72PIOMA14_II_0296353780..354001 [+], 222hypothetical protein
73PIOMA14_II_0297354006..357278 [+], 3273helicase SNF2/RAD54 family
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins68Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PubMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU