ICEberg
I. Information of ICE
ICEberg ID896
Name TnSgallo2.3 This is a predicted ICE derived from literature
OrganismStreptococcus gallolyticus ATCC BAA-2069
Size (bp)30580
GC content [Genome] (%)39.21
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_015215 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1420056..1450635 
Putative oriT region -
Putative relaxase coordinates: 1424812..1426458; Locus tag: SGGBAA2069_RS07135;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnSgallo2.3 is not available.



The graph information of TnSgallo2.3 components from NC_015215
Complete gene list of TnSgallo2.3 from NC_015215
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SGGBAA2069_RS070901416050..1416976 [-], 927glycosyltransferase
2SGGBAA2069_RS070951416973..1418265 [-], 1293hypothetical protein
3SGGBAA2069_RS071001418249..1419736 [-], 1488hypothetical protein
4SGGBAA2069_RS071051420014..1421354 [-], 1341ISLre2 family transposase
5SGGBAA2069_RS071101421617..1421916 [-], 300hypothetical protein
6SGGBAA2069_RS071151421910..1422359 [-], 450hypothetical protein
7SGGBAA2069_RS071201422604..1422921 [-], 318hypothetical protein
8SGGBAA2069_RS071251422924..1424180 [-], 1257lactate dehydrogenase
9SGGBAA2069_RS071301424195..1424797 [-], 603hypothetical protein
10SGGBAA2069_RS071351424812..1426458 [-], 1647group II intron-interrupted relaxase ltrBRelaxase, MOBP Family
11SGGBAA2069_RS071401426452..1426847 [-], 396plasmid mobilization relaxosome protein MobC
12SGGBAA2069_RS071451427029..1427445 [-], 417hypothetical protein
13SGGBAA2069_RS071501427516..1430623 [-], 3108DUF3991 domain-containing protein
14SGGBAA2069_RS071551430624..1430878 [-], 255hypothetical protein
15SGGBAA2069_RS071601430900..1432699 [-], 1800conjugal transfer protein TraGT4CP 
16SGGBAA2069_RS071651432696..1433214 [-], 519hypothetical protein
17SGGBAA2069_RS071701433226..1434059 [-], 834hypothetical protein
18SGGBAA2069_RS071751434007..1434285 [-], 279hypothetical protein
19SGGBAA2069_RS071801434287..1434928 [-], 642hypothetical proteinPrgL, T4SS component 
20SGGBAA2069_RS071851434951..1437581 [-], 2631CHAP domain-containing proteinPrgK, T4SS component 
21SGGBAA2069_RS071901437612..1439966 [-], 2355ATPase AAAPrgJ, T4SS component 
22SGGBAA2069_RS071951439920..1440273 [-], 354PrgI family protein
23SGGBAA2069_RS119851440391..1440939 [+], 549hypothetical protein
24SGGBAA2069_RS072051441158..1441724 [-], 567hypothetical protein
25SGGBAA2069_RS072101441736..1442485 [-], 750hypothetical protein
26SGGBAA2069_RS072151442504..1442728 [-], 225hypothetical protein
27SGGBAA2069_RS072201442815..1443309 [-], 495hypothetical protein
28SGGBAA2069_RS072401446633..1446950 [-], 318hypothetical protein
29SGGBAA2069_RS072451447256..1447516 [-], 261hypothetical protein
30SGGBAA2069_RS072501447535..1447813 [-], 279hypothetical protein
31SGGBAA2069_RS072551447968..1448153 [-], 186hypothetical protein
32SGGBAA2069_RS072601448168..1448464 [-], 297hypothetical protein
33SGGBAA2069_RS072701449962..1450171 [-], 210hypothetical protein
34SGGBAA2069_RS072751450326..1452794 [-], 2469alkaline phosphatase family protein
35SGGBAA2069_RS072801452791..1454551 [-], 1761alpha-L-Rha alpha-1,3-L-rhamnosyltransferase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins29Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PubMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU