 ICEberg ID | 89 |
Name  | SXT(ET)  |
| ICEO ID | ICEO_0000630 |
| Organism | Vibrio cholerae O1 biovar El Tor 1999 |
| Size (bp) | - |
| GC content [Genome] (%) | - |
| Insertion site | prfC |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | AY035340 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of SXT(ET) components from AY035340 | |||||
 | |||||
| Incomplete gene list of SXT(ET) from AY035340 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | traF | 1..945 [-], 945 | TraF | TraF_F, T4SS component | |
| 2 | intI9 | 1202..2290 [-], 1089 | site-specific tyrosine recombinase | Integrase | |
| 3 | dfrA1 | 2453..2926 [+], 474 | dihydrofolate reductase | AR | |
| 4 | - | 3031..3456 [+], 426 | unknown | ||
| 5 | - | 3654..4064 [+], 411 | unknown | ||
| 6 | - | 4135..4497 [+], 363 | unknown | ||
| 7 | - | 4597..5298 [+], 702 | unknown | ||
| 8 | - | 5295..5540 [-], 246 | unknown | ||
| 9 | - | 5971..6202 [-], 232 | unknown | ||
|
(1) Pande K; Mendiratta DK; Vijayashri D; Thamke DC; Narang P (2012). SXT constin among Vibrio cholerae isolates from a tertiary care hospital. Indian J Med Res. 135:346-50. [PubMed:22561621]
|
|
(2) Hochhut B; Lotfi Y; Mazel D; Faruque SM; Woodgate R; Waldor MK (2001). Molecular analysis of antibiotic resistance gene clusters in vibrio cholerae O139 and O1 SXT constins. Antimicrob Agents Chemother. 45(11):2991-3000. [PubMed:11600347]
|
| experimental literature |