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ICE
Gene list
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References
I. Information of ICE
ICEberg ID
89
Name
SXT(ET)
ICEO ID
ICEO_0000630
Organism
Vibrio cholerae
O1 biovar El Tor 1999
Size (bp)
-
GC content [Genome] (%)
-
Insertion site
prfC
Function
-
Species that ICE can be transferred to
-
Nucleotide Sequence
AY035340
(partial ICE sequence)
Putative
oriT
region
-
Putative relaxase
-
II. ICE interaction with IME/CIME/
The interaction information of SXT(ET) is not available.
The graph information of SXT(ET) components from
AY035340
Incomplete gene list of SXT(ET) from
AY035340
#
Gene
Coordinates [+/-], size (bp)
Product
(GenBank annotation)
*Reannotation
1
traF
1..945 [-], 945
TraF
TraF_F, T4SS component
2
intI9
1202..2290 [-], 1089
site-specific tyrosine recombinase
Integrase
3
dfrA1
2453..2926 [+], 474
dihydrofolate reductase
AR
4
-
3031..3456 [+], 426
unknown
5
-
3654..4064 [+], 411
unknown
6
-
4135..4497 [+], 363
unknown
7
-
4597..5298 [+], 702
unknown
8
-
5295..5540 [-], 246
unknown
9
-
5971..6202 [-], 232
unknown
Element
No. of sequences
Download
Nucleotide sequences
1
Fasta
Proteins
9
Fasta
(1) Pande K; Mendiratta DK; Vijayashri D; Thamke DC; Narang P (2012). SXT constin among Vibrio cholerae isolates from a tertiary care hospital.
Indian J Med Res
. 135:346-50. [
PubMed:22561621
]
(2) Hochhut B; Lotfi Y; Mazel D; Faruque SM; Woodgate R; Waldor MK (2001). Molecular analysis of antibiotic resistance gene clusters in vibrio cholerae O139 and O1 SXT constins.
Antimicrob Agents Chemother
. 45(11):2991-3000. [
PubMed:11600347
]
experimental literature