ICEberg
I. Information of ICE
ICEberg ID887
Name TnSang2.1 This is a predicted ICE derived from literature
OrganismStreptococcus anginosus SK52
Size (bp)33673
GC content [Genome] (%)37.84
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNZ_AFIM01000003 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..33673 
Putative oriT region -
Putative relaxase coordinates: 30345..31973; Locus tag: HMPREF9966_RS00370;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnSang2.1 is not available.



The graph information of TnSang2.1 components from NZ_AFIM01000003
Complete gene list of TnSang2.1 from NZ_AFIM01000003
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HMPREF9966_RS00230114..485 [+], 372hypothetical protein
2HMPREF9966_RS00235507..689 [+], 183hypothetical protein
3HMPREF9966_RS094101167..1385 [+], 219hypothetical protein
4HMPREF9966_RS002451387..2064 [+], 678DUF2786 domain-containing protein
5HMPREF9966_RS002502103..2288 [+], 186hypothetical protein
6HMPREF9966_RS002552289..3365 [+], 1077replication initiator protein A
7HMPREF9966_RS002603355..3645 [+], 291hypothetical protein
8HMPREF9966_RS002653638..3904 [+], 267XRE family transcriptional regulator
9HMPREF9966_RS002704214..4531 [+], 318hypothetical protein
10HMPREF9966_RS002754681..7239 [+], 2559SEC10/PgrA surface exclusion domain-containing proteinPrgA, T4SS component 
11HMPREF9966_RS002807354..11133 [+], 3780LPXTG cell wall anchor domain-containing proteinPrgB, T4SS component 
12HMPREF9966_RS0028511213..11983 [+], 771LPXTG cell wall anchor domain-containing proteinPrgC, T4SS component 
13HMPREF9966_RS0029012097..12324 [+], 228hypothetical proteinPrgF, T4SS component 
14HMPREF9966_RS0029512419..12964 [+], 546hypothetical protein
15HMPREF9966_RS0030013018..13770 [+], 753membrane proteinPrgH, T4SS component 
16HMPREF9966_RS0030513781..14239 [+], 459hypothetical protein
17HMPREF9966_RS0031014223..14801 [+], 579hypothetical protein
18HMPREF9966_RS0031514873..15226 [+], 354PrgI family protein
19HMPREF9966_RS0032015204..17564 [+], 2361DUF87 domain-containing proteinPrgJ, T4SS component 
20HMPREF9966_RS0032517597..20293 [+], 2697CHAP domain-containing proteinPrgK, T4SS component 
21HMPREF9966_RS0033020315..20926 [+], 612hypothetical proteinPrgL, T4SS component 
22HMPREF9966_RS0033520944..21216 [+], 273hypothetical protein
23HMPREF9966_RS0034021216..21986 [+], 771hypothetical protein
24HMPREF9966_RS0034522011..22502 [+], 492DUF3801 domain-containing protein
25HMPREF9966_RS0035022502..24559 [+], 2058conjugal transfer protein TraGT4CP 
26HMPREF9966_RS0035524597..29291 [+], 4695DUF3991 domain-containing protein
27HMPREF9966_RS0036029334..29624 [+], 291hypothetical protein
28HMPREF9966_RS0036529993..30379 [+], 387plasmid mobilization relaxosome protein MobC
29HMPREF9966_RS0037030345..31973 [+], 1629relaxase/mobilization nucleaseRelaxase, MOBP Family
30HMPREF9966_RS0037532074..33348 [+], 1275ISLre2 family transposaseIntegrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins30Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PubMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU