 ICEberg ID | 882 |
Name  | TnGBS2.5  |
| Organism | Streptococcus agalactiae 1122 |
| Size (bp) | 38209 |
| GC content [Genome] (%) | 34.53 |
| Insertion site | rpmH |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | KC460338 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 7439..45647 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 15058..16686; Family: MOBP |
The graph information of TnGBS2.5 components from KC460338 | |||||
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| Complete gene list of TnGBS2.5 from KC460338 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 2979..4523 [-], 1545 | DltA | ||
| 2 | - | 4660..5847 [-], 1188 | DltS | ||
| 3 | - | 5847..6521 [-], 675 | DltR | ||
| 4 | rpmH | 6877..7011 [-], 135 | RpmH | ||
| 5 | - | 7439..8791 [-], 1353 | transposase | Integrase | |
| 6 | - | 8943..9767 [-], 825 | hypothetical protein | ||
| 7 | - | 9971..11029 [+], 1059 | hypothetical protein | ||
| 8 | - | 11207..11485 [-], 279 | hypothetical protein | ||
| 9 | - | 11512..12309 [-], 798 | hypothetical protein | ||
| 10 | - | 12388..12768 [-], 381 | hypothetical protein | ||
| 11 | - | 12890..13474 [-], 585 | hypothetical protein | ||
| 12 | - | 13595..14146 [-], 552 | hypothetical protein | ||
| 13 | - | 14225..15022 [-], 798 | hypothetical protein | ||
| 14 | - | 15058..16686 [-], 1629 | hypothetical protein | Relaxase, MOBP Family | |
| 15 | - | 16658..17032 [-], 375 | hypothetical protein | ||
| 16 | - | 17335..17640 [-], 306 | hypothetical protein | ||
| 17 | - | 17698..22017 [-], 4320 | hypothetical protein | ||
| 18 | - | 22031..22387 [-], 357 | hypothetical protein | ||
| 19 | - | 22436..24172 [-], 1737 | hypothetical protein | ||
| 20 | - | 24406..26472 [-], 2067 | hypothetical protein | T4CP | |
| 21 | - | 26472..26963 [-], 492 | hypothetical protein | ||
| 22 | - | 26981..27784 [-], 804 | hypothetical protein | ||
| 23 | - | 28075..28461 [-], 387 | hypothetical protein | ||
| 24 | - | 28473..29078 [-], 606 | hypothetical protein | PrgL, T4SS component | |
| 25 | - | 29095..31263 [-], 2169 | hypothetical protein | PrgK, T4SS component | |
| 26 | - | 32917..34434 [-], 1518 | hypothetical protein | PrgJ, T4SS component | |
| 27 | - | 34379..34735 [-], 357 | hypothetical protein | ||
| 28 | - | 34792..35544 [-], 753 | hypothetical protein | PrgH, T4SS component | |
| 29 | - | 35597..36169 [-], 573 | hypothetical protein | ||
| 30 | - | 36684..41228 [-], 4545 | hypothetical protein | ||
| 31 | - | 41321..42106 [-], 786 | hypothetical protein | ||
| 32 | - | 42117..42443 [-], 327 | hypothetical protein | ||
| 33 | - | 42678..43814 [-], 1137 | hypothetical protein | ||
| 34 | - | 44168..45523 [-], 1356 | hypothetical protein | ||
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PubMed:23435978] 
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| experimental literature |
| in silico analysis literature |