ICEberg
I. Information of ICE
ICEberg ID881
Name TnGBS2.4 This is a predicted ICE derived from literature
OrganismStreptococcus agalactiae CZ183
Size (bp)28658
GC content [Genome] (%)38.44
Insertion siteguaC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC492041 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates358..29015 
Putative oriT region -
Putative relaxase coordinates: 1728..3356; Locus tag: TnGBS2.4_02c;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnGBS2.4 is not available.



The graph information of TnGBS2.4 components from KC492041
Complete gene list of TnGBS2.4 from KC492041
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1TnGBS2.4_01c358..1653 [-], 1296DDE transposaseIntegrase 
2TnGBS2.4_02c1728..3356 [-], 1629relaxaseRelaxase, MOBP Family
3TnGBS2.4_03c3322..3708 [-], 387hypothetical protein
4TnGBS2.4_04c4077..4367 [-], 291hypothetical protein
5TnGBS2.4_05c4410..8558 [-], 4149putative primase
6TnGBS2.4_06c8594..10651 [-], 2058putative VirD4 domain proteinT4CP 
7TnGBS2.4_07c10651..11142 [-], 492hypothetical protein
8TnGBS2.4_08c11167..11937 [-], 771hypothetical protein
9TnGBS2.4_09c12227..12838 [-], 612hypothetical proteinPrgL, T4SS component 
10TnGBS2.4_10c12855..15146 [-], 2292VirB1 domain proteinPrgK, T4SS component 
11TnGBS2.4_11c15584..17992 [-], 2409VirB4 domain proteinPrgJ, T4SS component 
12TnGBS2.4_12c17922..18275 [-], 354hypothetical protein
13TnGBS2.4_13c18347..18925 [-], 579hypothetical protein
14TnGBS2.4_14c18909..19367 [-], 459hypothetical protein
15TnGBS2.4_15c19378..20130 [-], 753putative VirB6 domain proteinPrgH, T4SS component 
16TnGBS2.4_16c20184..20729 [-], 546hypothetical protein
17TnGBS2.4_17c21146..23347 [-], 2202LPXTG proteinPrgB, T4SS component 
18TnGBS2.4_18c23367..24146 [-], 780LPXTG protein
19TnGBS2.4_19c24149..24481 [-], 333hypothetical protein
20TnGBS2.4_20c24775..25101 [-], 327putative single-strand DNA binding protein
21TnGBS2.4_22c25843..26496 [-], 654hypothetical protein
22TnGBS2.4_23c26399..26890 [-], 492hypothetical protein
23TnGBS2.4_24c27152..27277 [-], 126hypothetical protein
24TnGBS2.4_2527707..28108 [+], 402hypothetical protein
25TnGBS2.4_26c28644..29015 [-], 372hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins25Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PubMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU