ICEberg
I. Information of ICE
ICEberg ID880
Name TnGBS2.3 This is a predicted ICE derived from literature
OrganismStreptococcus agalactiae Wc3
Size (bp)32507
GC content [Genome] (%)38.25
Insertion sitefbsA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC492040 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1347..33853 
Putative oriT region -
Putative relaxase coordinates: 3205..4845; Locus tag: TnGBS2.3_03;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnGBS2.3 is not available.



The graph information of TnGBS2.3 components from KC492040
Complete gene list of TnGBS2.3 from KC492040
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1TnGBS2.3_011347..2630 [-], 1284DDE transposase UPF0236 familyIntegrase 
2TnGBS2.3_022661..3068 [-], 408hypothetical protein
3TnGBS2.3_033205..4845 [-], 1641putative relaxaseRelaxase, MOBP Family
4TnGBS2.3_044817..5191 [-], 375hypothetical protein
5TnGBS2.3_055194..5754 [-], 561hypothetical protein
6TnGBS2.3_066097..6396 [-], 300hypothetical protein
7TnGBS2.3_076448..9747 [-], 3300putative primase protein
8TnGBS2.3_089689..10054 [-], 366hypothetical protein
9TnGBS2.3_0910096..12141 [-], 2046VirD4 protein domain proteinT4CP 
10TnGBS2.3_1012141..12632 [-], 492hypothetical protein
11TnGBS2.3_1112654..13439 [-], 786hypothetical proteinOrf13_p, T4SS component 
12TnGBS2.3_1213731..14336 [-], 606hypothetical proteinPrgL, T4SS component 
13TnGBS2.3_1314357..16675 [-], 2319VirB1 domain proteinPrgK, T4SS component 
14TnGBS2.3_1417082..17408 [-], 327hypothetical protein
15TnGBS2.3_1517432..18052 [-], 621hypothetical protein
16TnGBS2.3_1618018..20417 [-], 2400VirB4type IV secretion/conjugal transfer ATPase, VirB4 family proteinPrgJ, T4SS component 
17TnGBS2.3_1720359..20736 [-], 378hypothetical protein
18TnGBS2.3_1820780..21238 [-], 459hypothetical protein
19TnGBS2.3_1921231..21527 [-], 297hypothetical protein
20TnGBS2.3_2021564..22316 [-], 753VirB6 domain proteinPrgH, T4SS component 
21TnGBS2.3_2122367..22948 [-], 582hypothetical protein
22TnGBS2.3_2223575..26397 [-], 2823LPXTG proteinPrgB, T4SS component 
23TnGBS2.3_2326450..27172 [-], 723LPXTG proteinPrgC, T4SS component 
24TnGBS2.3_2427192..29453 [-], 2262LPXTG proteinPrgA, T4SS component 
25TnGBS2.3_2529470..29769 [-], 300hypothetical protein
26TnGBS2.3_2630533..31603 [-], 1071RepA Nterminal domain protein
27TnGBS2.3_2731944..32495 [-], 552hypothetical protein
28TnGBS2.3_2832520..32873 [-], 354hypothetical protein
29TnGBS2.3_2933482..33853 [-], 372hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins29Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PubMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU