ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	842
Name	ICESz1
Organism	Streptococcus equi subsp. Zooepidemicus H70
Size (bp)	47573
GC content [Genome] (%)	35.56
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	FM204884 (complete ICE sequence in this genome)
Replicon	-
Genome coordinates	1399879..1447451
Putative oriT region	-
Putative relaxase	coordinates: 1415776..1417107; Locus tag: SZO_12770; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of ICESz1 is not available.

The graph information of ICESz1 components from FM204884

Complete gene list of ICESz1 from FM204884
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SZO_12510	1394947..1395312 [+], 366	putative membrane protein
2	SZO_12520	1395331..1395975 [+], 645	phosphoglycerate mutase family protein
3	SZO_12530	1396812..1398017 [-], 1206	conserved hypothetical protein
4	SZO_12540	1398231..1399028 [-], 798	transposase
5	SZO_12550	1399115..1399846 [-], 732	transposase
6	SZO_12560	1399879..1400253 [-], 375	conserved hypothetical protein
7	SZO_12600	1401148..1401357 [-], 210	putative DNA-binding protein
8	SZO_12610	1401482..1402141 [-], 660	conserved hypothetical protein
9	SZO_12650	1407161..1407340 [-], 180	putative regulatory protein
10	SZO_12680	1408925..1409206 [-], 282	putative membrane protein
11	SZO_12690	1409213..1409371 [-], 159	conserved hypothetical protein
12	SZO_12700	1409368..1411050 [-], 1683	site-specific recombinase	Integrase
13	SZO_12710	1411791..1412204 [-], 414	conserved hypothetical protein
14	SZO_12720	1412447..1413325 [-], 879	radical SAM superfamily protein
15	SZO_12730	1413344..1413886 [-], 543	conserved hypothetical protein
16	SZO_12740	1413893..1414156 [-], 264	conserved hypothetical protein
17	SZO_12750	1414218..1415117 [-], 900	putative DNA-bind protein
18	SZO_12760	1415420..1415770 [+], 351	conserved hypothetical protein
19	SZO_12770	1415776..1417107 [+], 1332	relaxase/mobilisation protein	Relaxase, MOB_P Family
20	SZO_12780	1417179..1417838 [-], 660	conserved hypothetical protein
21	SZO_12790	1417879..1426629 [-], 8751	putative helicase
22	SZO_12800	1426713..1428131 [-], 1419	putative DNA-binding protein
23	SZO_12810	1428150..1428329 [-], 180	putative regulatory protein
24	SZO_12820	1428413..1430119 [-], 1707	DNA topoisomerase
25	SZO_12830	1430215..1431744 [-], 1530	putative membrane protein
26	SZO_12840	1431719..1431958 [-], 240	conserved hypothetical protein
27	SZO_12850	1431971..1434094 [-], 2124	putative membrane protein
28	SZO_12860	1434098..1436524 [-], 2427	putative conjugal transfer protein	PrgJ, T4SS component
29	SZO_12870	1436436..1436825 [-], 390	putative conjugative transposon membrane protein
30	SZO_12880	1436829..1437092 [-], 264	putative exported protein
31	SZO_12890	1437110..1437973 [-], 864	putative membrane protein
32	SZO_12920	1440963..1441274 [-], 312	conserved hypothetical protein
33	SZO_12930	1441625..1443103 [-], 1479	ABC transporter protein
34	SZO_12960	1444952..1445437 [-], 486	conserved hypothetical protein
35	SZO_12970	1445434..1446285 [-], 852	putative DNA replication protein
36	SZO_12980	1446282..1447136 [-], 855	putative replication initiation protein
37	SZO_12981	1447151..1447432 [-], 282	conserved hypothetical protein
38	SZO_12990	1447451..1449082 [-], 1632	putative RNA methyltransferase
39	SZO_13000	1449160..1450590 [-], 1431	cell envelope-related transcriptional attenuator domain protein
40	SZO_13010	1450788..1451282 [-], 495	putative shikimate kinase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	32	Fasta

(1) Chancey ST; Agrawal S; Schroeder MR; Farley MM; Tettelin H; Stephens DS (2015). Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae. Front Microbiol. 6:26. [PubMed:25709602]

(2) Holden MT; Heather Z; Paillot R; Steward KF; Webb K; Ainslie F; Jourdan T; Bason NC; Holroyd NE; Mungall K; Quail MA; Sanders M; Simmonds M; Willey D; Brooks K; Aanensen DM; Spratt BG; Jolley KA; Maiden MC; Kehoe M; Chanter N; Bentley SD; Robinson C; Maskell DJ; Parkhill J; Waller AS (2009). Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. PLoS Pathog. 5(3):e1000346. [PubMed:19325880]

in silico analysis literature