ICEberg
I. Information of ICE
ICEberg ID841
Name ICESsuZJ20091101-2 This is a predicted ICE derived from literature
OrganismStreptococcus suis ZJ20091101
Size (bp)112,763
GC content [Genome] (%)38.38
Insertion siterplL
FunctionAntibiotic resistance genes: tet(O)
Species that ICE can be transferred to-
Nucleotide SequenceKX077883 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates875..113637 
Putative oriT region -
Putative relaxase coordinates: 79877..80842;   Family:  MOBV


II. ICE interaction with IME/CIME/

The interaction information of ICESsuZJ20091101-2 is not available.



The graph information of ICESsuZJ20091101-2 components from KX077883
Complete gene list of ICESsuZJ20091101-2 from KX077883
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1hyd1..750 [-], 750putative hydrolase (HAD superfamily)
2-937..2145 [-], 1209integrase
3-2138..2386 [-], 249hypothetical protein
4-2470..2598 [-], 129hypothetical protein
5-2722..3138 [-], 417hypothetical protein
6-3346..6285 [-], 2940fucolectin-related protein
7-6428..7321 [-], 894hexokinase
8-7323..9200 [-], 1878enterotoxin
9-9190..10524 [-], 1335alpha-L-fucosidase
10-10521..11360 [-], 840multiple sugar ABC transporter, membrane-spanning
11-11371..12291 [-], 921N-Acetyl-D-glucosamine ABC transport system
12-12346..13644 [-], 1299N-Acetyl-D-glucosamine ABC transport system
13-13661..14305 [-], 645L-fuculose phosphate aldolase
14-14320..16107 [-], 1788L-fucose isomerase
15-16091..17518 [-], 1428L-fuculokinase
16-17677..18447 [+], 771L-fucose operon activator
17-18621..18974 [+], 354hypothetical protein
18-19081..20271 [+], 1191Rlx-like protein
19-20434..20592 [+], 159hypothetical protein
20-20937..21629 [+], 693pleiotropic regulator of exopolysaccharide
21-21632..21766 [+], 135hypothetical protein
22-21772..23187 [+], 1416ImpB/MucB/SamB family protein
23-23184..23534 [+], 351hypothetical protein
24-23521..23814 [+], 294hypothetical protein
25-23861..24499 [-], 639hypothetical protein
26-24496..31767 [-], 7272superfamily II DNA and RNA helicase
27-31786..32238 [-], 453hypothetical protein
28-32235..33194 [-], 960modification methylase ScrFIB
29-33191..34375 [-], 1185DNA-cytosine methyltransferase
30-34452..34682 [-], 231hypothetical protein
31-34667..35305 [-], 639hypothetical protein
32-35348..35944 [-], 597mature parasite-infected erythrocyte surface
33-35928..36143 [-], 216hypothetical protein
34-36154..39375 [-], 3222immunogenic secreted proteinOrf13_p, T4SS component 
35-39383..41812 [-], 2430TrsE-like proteinT4CP 
36-41769..42137 [-], 369hypothetical protein
37-42150..43013 [-], 864hypothetical protein
38-43022..43237 [-], 216hypothetical protein
39-43237..43545 [-], 309hypothetical protein
40-43621..45213 [-], 1593TrsK-like protein
41-45420..45914 [-], 495hypothetical protein
42-45907..48501 [-], 2595virulence-associated cell-wall-anchored protein
43-48498..49457 [-], 960hypothetical protein
44-49718..50923 [-], 1206integraseIntegrase 
45-50926..51174 [-], 249hypothetical protein
46-51233..51376 [+], 144hypothetical protein
47-51444..51668 [-], 225putative repressor protein
48-51915..52811 [-], 897LacX protein
49-52899..54305 [-], 14076-phospho-beta-galactosidase
50-54371..56074 [-], 1704PTS system, lactose-specific IIB component
51-56074..56391 [-], 318PTS system, lactose-specific IIA component
52-56419..57399 [-], 981tagatose 1,6-bisphosphate aldolase
53-57402..58334 [-], 933tagatose-6-phosphate kinase
54-58346..58861 [-], 516galactose-6-phosphate isomerase LacB subunit
55-58895..59320 [-], 426galactose-6-phosphate isomerase LacA subunit
56-59558..60508 [-], 951glucokinase
57-60688..61449 [+], 762lactose phosphotransferase system repressor
58-61513..61866 [+], 354putative FMN hydrolase
59-62169..64034 [-], 1866relaxase
60-64021..64386 [-], 366hypothetical protein
61-64396..64755 [-], 360hypothetical protein
62-64849..64971 [-], 123hypothetical protein
63-65081..65665 [-], 585hypothetical protein
64-65712..67505 [-], 1794ATP-dependent DNA helicase
65-67634..69463 [-], 1830hypothetical protein
66-69465..70409 [-], 945mobile element protein
67-70494..70703 [-], 210hypothetical protein
68-70684..71478 [-], 795zeta toxin
69-71478..71954 [-], 477transcription regulator, probable
70-72024..72308 [-], 285hypothetical protein
71-72352..72747 [-], 396methyl-accepting chemotaxis protein
72-72751..72978 [-], 228hypothetical protein
73-73032..74120 [-], 1089hypothetical protein
74-74160..74798 [-], 639hypothetical proteinPrgL, T4SS component 
75-74788..74904 [-], 117hypothetical protein
76-74909..75199 [-], 291hypothetical protein
77-75214..75513 [-], 300hypothetical protein
78-75583..76494 [-], 912SNF2 family protein
79-76509..78392 [-], 1884site-specific recombinase
80-78446..78637 [-], 192hypothetical protein
81-78708..78938 [-], 231bacterial seryl-tRNA synthetase related protein
82-79015..79869 [-], 855chromosome (plasmid) partitioning protein ParB
83-79877..80842 [-], 966hypothetical proteinRelaxase, MOBV Family
84-81361..82392 [-], 1032hypothetical protein
85-82546..83019 [-], 474RNA polymerase ECF-type sigma factor
86-83103..83528 [-], 426hypothetical protein
87-83623..84258 [-], 636hypothetical protein
88-84847..86766 [-], 1920tetracycline resistance protein TetOAR 
89-87133..87507 [-], 375TnpV
90-87488..93421 [-], 5934SNF2 family protein
91-93472..94023 [-], 552hypothetical protein
92-94007..94198 [-], 192putative calcium-binding protein
93-94199..99103 [-], 4905agglutinin receptorPrgB, T4SS component 
94-99345..99938 [-], 594hypothetical protein
95-100183..102987 [-], 2805hypothetical proteinPrgK, T4SS component 
96-102984..105314 [-], 2331TrsE-like proteinPrgJ, T4SS component 
97-105292..105645 [-], 354hypothetical protein
98-105708..106562 [-], 855hypothetical proteinPrgH, T4SS component 
99-106579..106821 [-], 243hypothetical protein
100-106839..108659 [-], 1821hypothetical protein
101-108659..109147 [-], 489hypothetical protein
102-109224..109805 [-], 582hypothetical protein
103-109808..110041 [-], 234hypothetical protein
104-110051..110434 [-], 384hypothetical protein
105-110444..110872 [-], 429hypothetical protein
106-110856..112211 [-], 1356modification methylase
107-112369..113193 [-], 825hypothetical protein
108-113190..113363 [-], 174hypothetical protein
109-113447..113560 [+], 114hypothetical protein
110-113623..113988 [-], 366LSU ribosomal protein L7/L12 (P1/P2)
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins108Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PubMed:27774436]
 

Genomics & Bioinformatics Group in MML, SJTU