ICEberg
I. Information of ICE
ICEberg ID836
Name ICESsuLP081102 This is a predicted ICE derived from literature
OrganismStreptococcus suis LP081102
Size (bp)64,515
GC content [Genome] (%)38.25
Insertion siterplL
FunctionAntibiotic resistance genes: erm(B), tet(O)
Species that ICE can be transferred to-
Nucleotide SequenceKX077885 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates875..65389 
Putative oriT region -
Putative relaxase coordinates: 31382..32347;   Family:  MOBV


II. ICE interaction with IME/CIME/

The interaction information of ICESsuLP081102 is not available.



The graph information of ICESsuLP081102 components from KX077885
Complete gene list of ICESsuLP081102 from KX077885
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1hdy1..750 [-], 750putative hydrolase (HAD superfamily)
2-933..2135 [-], 1203integraseIntegrase 
3-2158..2385 [-], 228hypothetical protein
4-2665..2889 [-], 225transcriptional regulator, Cro/CI family
5-2916..3065 [+], 150hypothetical protein
6-3159..3446 [-], 288rhamnulose-1-phosphate aldolase
7-3687..3809 [-], 123rhamnulose-1-phosphate aldolase
8-3822..4904 [-], 1083L-rhamnose isomerase
9-5185..5907 [-], 723hypothetical protein
10-5918..7105 [-], 1188hypothetical protein
11-7086..7832 [-], 747family 2 glycosyl transferase
12-7804..9246 [-], 1443phosphoenolpyruvate synthase
13-9243..10169 [-], 927hypothetical protein
14-10210..10344 [-], 135hypothetical protein
15-10358..11065 [-], 708hypothetical protein
16-11097..11828 [-], 732multi antimicrobial extrusion protein
17-11821..12741 [-], 921ABC transporter, ATP-binding protein
18-12797..12934 [-], 138hypothetical protein
19-13084..13911 [-], 828putative transcriptional regulator PlcR
20-14174..16039 [-], 1866relaxase
21-16026..16391 [-], 366hypothetical protein
22-16404..16760 [-], 357hypothetical protein
23-16854..16976 [-], 123hypothetical protein
24-17082..19589 [-], 2508PHP N-terminal domain protein
25-19625..20392 [-], 768zeta toxin
26-20392..20868 [-], 477transcription regulator, probable
27-20938..21228 [-], 291hypothetical protein
28-21278..21667 [-], 390methyl-accepting chemotaxis protein
29-21664..21891 [-], 228hypothetical protein
30-21945..23021 [-], 1077hypothetical protein
31-23061..23699 [-], 639hypothetical proteinPrgL, T4SS component 
32-23795..24085 [-], 291hypothetical protein
33-24099..24398 [-], 300hypothetical protein
34-24469..25380 [-], 912SNF2 family protein
35-25421..27028 [-], 1608site-specific recombinase
36-27197..28051 [+], 855hypothetical protein
37-28143..28358 [+], 216putative transcriptional regulator
38-28375..28539 [+], 165epsilon antitoxin
39-28568..29305 [+], 738rRNA (adenine-N(6)-) -methyltransferaseAR 
40-29749..29925 [-], 177site-specific recombinase
41-29980..30243 [-], 264hypothetical protein
42-30243..30473 [-], 231bacterial seryl-tRNA synthetase related protein
43-30519..31373 [-], 855chromosome (plasmid) partitioning protein ParB
44-31382..32347 [-], 966hypothetical proteinRelaxase, MOBV Family
45-32391..32645 [+], 255hypothetical protein
46-32872..33690 [-], 819hypothetical protein
47-33774..34289 [-], 516RNA polymerase ECF-type sigma factor
48-34356..34526 [-], 171RNA polymerase ECF-type sigma factor
49-34610..35035 [-], 426hypothetical protein
50-35130..35642 [-], 513hypothetical protein
51-36355..38274 [-], 1920tetracycline resistance protein TetOAR 
52-38665..39039 [-], 375TnpV
53-39020..44968 [-], 5949SNF2 family protein
54-45017..45568 [-], 552hypothetical protein
55-45552..45743 [-], 192putative calcium-binding protein
56-45744..50639 [-], 4896agglutinin receptorPrgB, T4SS component 
57-50632..50772 [+], 141hypothetical protein
58-50875..51885 [-], 1011hypothetical protein
59-52022..54823 [-], 2802hypothetical proteinPrgK, T4SS component 
60-54825..57155 [-], 2331TrsE-like proteinPrgJ, T4SS component 
61-57133..57486 [-], 354hypothetical protein
62-57548..58402 [-], 855hypothetical protein
63-58421..58663 [-], 243hypothetical protein
64-58681..60498 [-], 1818hypothetical proteinT4CP 
65-60498..60986 [-], 489hypothetical protein
66-61063..61647 [-], 585hypothetical protein
67-61650..61883 [-], 234hypothetical protein
68-61892..62275 [-], 384hypothetical protein
69-62286..62714 [-], 429hypothetical protein
70-62698..64053 [-], 1356DNA-cytosine methyltransferase
71-64202..65005 [-], 804hypothetical protein
72-65002..65175 [-], 174hypothetical protein
73-65236..65355 [-], 120hypothetical protein
74rplL65375..65740 [-], 366LSU ribosomal protein L7/L12 (P1/P2)
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins72Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PubMed:27774436]
 

Genomics & Bioinformatics Group in MML, SJTU