ICEberg
I. Information of ICE
ICEberg ID833
Name ICESsuJH1301 This is a predicted ICE derived from literature
OrganismStreptococcus suis JH1301
Size (bp)81,649
GC content [Genome] (%)37.24
Insertion siterplL
FunctionAntibiotic resistance genes: aph(3')-III, erm(B), tet(O)
Species that ICE can be transferred to-
Nucleotide SequenceKX077887 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates875..82523 
Putative oriT region -
Putative relaxase coordinates: 62078..63943;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESsuJH1301 is not available.



The graph information of ICESsuJH1301 components from KX077886
Complete gene list of ICESsuJH1301 from KX077886
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-717..884 [+], 168hypothetical protein
2-887..1705 [+], 819hypothetical protein
3-1854..3209 [+], 1356DNA-cytosine methyltransferase
4-3193..3621 [+], 429hypothetical protein
5-3632..4015 [+], 384hypothetical protein
6-4024..4257 [+], 234hypothetical protein
7-4260..4844 [+], 585hypothetical protein
8-4921..5409 [+], 489hypothetical protein
9-5409..7226 [+], 1818hypothetical proteinT4CP 
10-7244..7486 [+], 243hypothetical protein
11-7505..8359 [+], 855hypothetical protein
12-8421..8774 [+], 354hypothetical protein
13-8731..11082 [+], 2352TrsE-like proteinPrgJ, T4SS component 
14-11084..13885 [+], 2802hypothetical proteinPrgK, T4SS component 
15-13972..14817 [-], 846abortive infection protein AbiGII
16-14814..15404 [-], 591abortive infection protein AbiGI
17-15685..20580 [+], 4896agglutinin receptorPrgB, T4SS component 
18-20581..20772 [+], 192putative calcium-binding protein
19-20756..21307 [+], 552hypothetical protein
20-21356..27259 [+], 5904SNF2 family protein
21-27289..27402 [+], 114hypothetical protein
22-27824..29635 [+], 1812tetron-type RNA-directed DNA polymerase
23-29695..30687 [+], 993SNF2 family protein
24-30758..31057 [+], 300hypothetical protein
25-31071..31361 [+], 291hypothetical protein
26-31457..32095 [+], 639hypothetical protein
27-32135..33211 [+], 1077hypothetical protein
28-33265..33492 [+], 228hypothetical protein
29-33489..33878 [+], 390methyl-accepting chemotaxis protein
30-33928..34224 [+], 297hypothetical protein
31-34513..35190 [+], 678transposase
32-35683..37608 [-], 1926ribosome protection-type tetracycline resistanceAR 
33-38124..38606 [+], 483DNA topoisomerase III
34-38678..38794 [+], 117DNA topoisomerase III
35-38902..39399 [+], 498putative DNA recombinase
36-39400..39816 [+], 417recombinase
37-39818..41380 [+], 1563putative DNA recombinaseIntegrase 
38-41523..41747 [+], 225helix-turn-helix domain protein
39-41762..42631 [+], 870hypothetical protein
40-42612..43346 [+], 735ubiquinone/menaquinone biosynthesis
41-43379..44287 [+], 909putative aminoglycoside 6-adenylyltansferase
42-44284..44538 [+], 255streptothricin acetyltransferase
43-44857..45651 [+], 795aminoglycoside phosphotransferaseAR 
44-46400..47137 [+], 738rRNA (adenine-N(6)-) -methyltransferaseAR 
45-47620..47859 [+], 240pheromone response surface protein PrgCOrf15_p, T4SS component 
46-48181..48459 [+], 279CopS protein
47-48856..49386 [+], 531mobile element protein
48-49578..49709 [+], 132arsenical resistance operon repressor
49-49769..50062 [+], 294arsenical resistance operon repressor
50-50064..50435 [+], 372arsenical resistance operon trans-acting
51-50455..50580 [+], 126hypothetical protein
52-50570..50917 [+], 348arsenical resistance operon repressor
53-50953..52695 [+], 1743arsenical pump-driving ATPase
54-52984..54657 [+], 1674pyridine nucleotide-disulfide oxidoreductase
55-54947..55882 [+], 936ABC transporter, ATP-binding protein
56-55875..56645 [+], 771ABC transporter, permease protein
57-56758..56988 [-], 231putative secreted cell wall proteinYddH, T4SS component 
58-57246..57464 [+], 219hypothetical protein
59-57698..59815 [-], 2118cadmium-transporting ATPase
60-59812..60171 [-], 360cadmium efflux system accessory protein
61-60255..60368 [-], 114hypothetical protein
62-61201..61338 [+], 138hypothetical protein
63-61357..61716 [+], 360hypothetical protein
64-61726..62091 [+], 366hypothetical protein
65-62078..63943 [+], 1866relaxaseRelaxase, MOBP Family
66-64274..64681 [-], 408putative FMN hydrolase
67-64690..65451 [-], 762lactose phosphotransferase system repressor
68-65632..66312 [+], 681glucokinase
69-66379..66582 [+], 204glucokinase
70-66816..67241 [+], 426galactose-6-phosphate isomerase LacA subunit
71-67269..67784 [+], 516galactose-6-phosphate isomerase LacB subunit
72-67796..68728 [+], 933tagatose-6-phosphate kinase
73-68731..69711 [+], 981tagatose 1,6-bisphosphate aldolase
74-69739..70056 [+], 318PTS system, lactose-specific IIA component
75-70056..71741 [+], 1686PTS system, lactose-specific IIB component
76-71807..73213 [+], 14076-phospho-beta-galactosidase
77-73301..74197 [+], 897LacX protein
78-74444..74668 [+], 225putative repressor protein
79-74736..74894 [-], 159hypothetical protein
80-74940..75080 [+], 141hypothetical protein
81-75179..76753 [+], 1575site-specific recombinase
82-76753..78372 [+], 1620site-specific recombinase
83-78365..79813 [+], 1449site-specific recombinase
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins82Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PubMed:27774436]
 

Genomics & Bioinformatics Group in MML, SJTU