ICEberg
I. Information of ICE
ICEberg ID823
Name ICESpST344-1 This is a predicted ICE derived from literature
OrganismStreptococcus pneumoniae ST344 NT 110 58
Size (bp)-
GC content [Genome] (%)[39.7]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP007593 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 671050..672936; Locus tag: SpnNT_00623;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESpST344-1 is not available.



The graph information of ICESpST344-1 components from CP007593
Incomplete gene list of ICESpST344-1 from CP007593
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SpnNT_00584604587..604760 [+], 174hypothetical protein
2SpnNT_00585604757..605584 [+], 828hypothetical protein
3hpaIIM_1605744..607102 [+], 1359Modification methylase HpaII
4SpnNT_00587607083..607511 [+], 429hypothetical protein
5SpnNT_00588607521..607904 [+], 384hypothetical protein
6SpnNT_00589607914..608147 [+], 234hypothetical protein
7SpnNT_00590608150..608731 [+], 582CAAX amino terminal protease self- immunity
8SpnNT_00591608807..609295 [+], 489hypothetical protein
9SpnNT_00592609295..611115 [+], 1821conjugal transfer coupling protein TraGT4CP 
10SpnNT_00593611133..611375 [+], 243hypothetical protein
11SpnNT_00594611395..612246 [+], 852hypothetical proteinPrgH, T4SS component 
12SpnNT_00595612436..612789 [+], 354PrgI family protein
13SpnNT_00596612746..615097 [+], 2352type-IV secretion system protein TraCPrgJ, T4SS component 
14SpnNT_00597615094..617772 [+], 2679N-acetylmuramoyl-L-alanine amidasePrgK, T4SS component 
15ltrA_1618481..620403 [+], 1923Group II intron-encoded protein LtrA
16SpnNT_00599620753..621598 [-], 846hypothetical protein
17SpnNT_00600621595..622185 [-], 591hypothetical protein
18SpnNT_00601622379..627283 [+], 4905glucan-binding proteinPrgB, T4SS component 
19SpnNT_00602627284..627475 [+], 192hypothetical protein
20SpnNT_00603627459..628010 [+], 552hypothetical protein
21SpnNT_00604628062..634865 [+], 6804DNA phosphorothioation system restriction enzyme
22SpnNT_00605634935..635234 [+], 300hypothetical protein
23SpnNT_00606635249..635539 [+], 291hypothetical protein
24pnp_2635985..637424 [+], 1440Polyribonucleotide nucleotidyltransferase
25SpnNT_00608637696..638589 [+], 894Adenosine monophosphate-protein transferase SoFic
26SpnNT_00609638893..661572 [+], 22680hypothetical protein
27SpnNT_00610661709..662965 [-], 1257Transposase
28SpnNT_00611663207..663845 [+], 639hypothetical proteinPrgL, T4SS component 
29SpnNT_00612663884..664972 [+], 1089DNA primase
30SpnNT_00613665026..665259 [+], 234hypothetical protein
31SpnNT_00614665256..665651 [+], 396hypothetical protein
32SpnNT_00615665667..665984 [+], 318hypothetical protein
33pezA_1666053..666529 [+], 477Antitoxin PezA
34pezT_1666529..667311 [+], 783UDP-N-acetylglucosamine kinase
35SpnNT_00618667508..668071 [+], 564hypothetical protein
36SpnNT_00619668058..668291 [+], 234hypothetical protein
37SpnNT_00620668281..669999 [+], 1719hypothetical protein
38SpnNT_00621670333..670695 [+], 363hypothetical protein
39SpnNT_00622670698..671063 [+], 366Bacterial mobilization protein (MobC)
40SpnNT_00623671050..672936 [+], 1887Relaxase/mobilization nuclease domain proteinRelaxase, MOBP Family
41SpnNT_00624673343..673603 [+], 261hypothetical protein
42patB_1673558..673935 [+], 378Cystathionine beta-lyase PatB
43SpnNT_00626674055..674324 [+], 270hypothetical protein
44SpnNT_00627674375..674941 [+], 567hypothetical protein
45SpnNT_00628675386..675727 [-], 342Transposase
46SpnNT_00629675951..676136 [-], 186hypothetical protein
47immR_1676629..676826 [+], 198HTH-type transcriptional regulator ImmR
48SpnNT_00631677097..677237 [+], 141hypothetical protein
49SpnNT_00632677337..678905 [+], 1569multiple promoter invertase
50SpnNT_00633678905..680521 [+], 1617hypothetical protein
51SpnNT_00634680514..681953 [+], 1440RecombinaseIntegrase 
52SpnNT_00635682069..683400 [+], 1332hypothetical protein
53SpnNT_00636683498..683866 [-], 369Plasmid stabilization system protein
54SpnNT_00637683856..684143 [-], 288addiction module antitoxin, RelB/DinJ family
55SpnNT_00638684709..684933 [+], 225RelB antitoxin
56SpnNT_00639684930..685088 [+], 159hypothetical protein
57prtP685902..692378 [+], 6477PII-type proteinase precursor
58SpnNT_00641692862..693170 [+], 309hypothetical protein
59SpnNT_00642693401..693745 [-], 345hypothetical protein
60SpnNT_00643693852..694361 [+], 510radical SAM protein
61SpnNT_00644694362..694781 [+], 420coproporphyrinogen III oxidase
62SpnNT_00645694784..695341 [+], 558putative methyltransferase
63SpnNT_00646695334..695588 [+], 255hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins49Fasta
(1) Morales M; Martin-Galiano AJ; Domenech M; Garcia E (2015). Insights into the Evolutionary Relationships of LytA Autolysin and Ply Pneumolysin-Like Genes in Streptococcus pneumoniae and Related Streptococci. Genome Biol Evol. 7(9):2747-61. [PubMed:26349755] in_silico
(2) Hilty M; Wuthrich D; Salter SJ; Engel H; Campbell S; Sa-Leao R; de Lencastre H; Hermans P; Sadowy E; Turner P; Chewapreecha C; Diggle M; Pluschke G; McGee L; Koseoglu Eser O; Low DE; Smith-Vaughan H; Endimiani A; Kuffer M; Dupasquier M; Beaudoing E; Weber J; Bruggmann R; Hanage WP; Parkhill J; Hathaway LJ; Muhlemann K; Bentley SD (2014). Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages. Genome Biol Evol. 6(12):3281-94. [PubMed:25480686] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU