ICEberg
I. Information of ICE
ICEberg ID770
Name ICECp1 This is a predicted ICE derived from literature
OrganismClostridium perfringens JIR12708
Size (bp)32477
GC content [Genome] (%)41.63
Insertion site-
Functionbacitracin resistance determinant (bcrRABD)
Species that ICE can be transferred to-
Nucleotide SequenceLN835295 (complete ICE sequence in this genome)
Replicon-
Genome coordinates52023..84499 
Putative oriT region -
Putative relaxase coordinates: 75834..76946;   Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICECp1 is not available.



The graph information of ICECp1 components from LN835295
Complete gene list of ICECp1 from LN835295
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-47450..47857 [+], 408hypothetical protein
2-47977..48225 [+], 249hypothetical protein
3-49593..49904 [-], 312hypothetical protein
4-50308..52023 [+], 1716cell wall protein
5-52023..53582 [+], 1560cell wall protein
6int54367..55563 [-], 1197tyrosine recombinase integraseIntegrase 
7xis55643..55849 [-], 207excisionase
8-56249..56497 [-], 249HTH-type transcriptional regulator
9-56484..56912 [-], 429positive control sigma-like factor
10-57352..57717 [-], 366hypothetical protein
11-57737..57961 [-], 225hypothetical protein
12-58113..58475 [+], 363HTH-type transcriptional regulator ImmR
13-58515..58850 [-], 336transcriptional regulator protein
14-58985..59551 [-], 567acetyltransferase
15-59613..60521 [-], 909transcriptional regulator protein
16-61471..62364 [-], 894VirB8-like conjugation proteinOrf13_Tn, T4SS component 
17iap62382..63389 [-], 1008peptidoglycan hydrolase-conjugationOrf14_Tn, T4SS component 
18-63386..65512 [-], 2127hypothetical protein-conjugationOrf15_Tn, T4SS component 
19-65512..67959 [-], 2448AAA-like domain protein-conjugationOrf16_Tn, T4SS component 
20-67946..68335 [-], 390TcpE family protein-conjugationOrf17_Tn, T4SS component 
21-68446..68949 [-], 504ArdA-family antirestriction protein
22-68967..69464 [-], 498ArdA-family antirestriction protein
23-69799..70107 [-], 309hypothetical protein
24bcrD70109..70936 [-], 828undecaprenyl pyrophosphate phosphatase
25bcrB70936..71637 [-], 702bacitracin ABC-2 family transporter permease
26bcrA71678..72595 [-], 918bacitracin ABC transporter ATPase
27bcrR72776..73390 [-], 615HTH-typeXRE family transcriptional regulator
28-73380..73706 [-], 327HTH-domain DNA binding protein
29-73743..74096 [+], 354HTH-domain DNA binding protein
30-74177..74365 [-], 189hypothetical protein
31-74392..74838 [-], 447acetyltransferase
32-74855..75265 [-], 411SnoaL-like polyketide cyclase
33-75460..75681 [-], 222conjugation proteinOrf19_Tn, T4SS component 
34-75678..75818 [-], 141hypothetical protein
35-75834..76946 [-], 1113relaxaseRelaxase, MOBT Family
36ftsK77215..78609 [-], 1395coupling protein FtsK/SpoIIIE DNA translocaseOrf21_Tn, T4SS component 
37-78713..79138 [-], 426hypothetical protein
38-79264..79650 [-], 387hypothetical protein
39-79666..79992 [-], 327transposase
40-80406..81227 [-], 822transposase
41-81281..81553 [-], 273transposase
42-81626..84499 [-], 2874cell wall protein
43-84911..85336 [-], 426hypothetical protein
44-85848..86201 [+], 354hypothetical protein
45-86417..87274 [+], 858hypothetical protein
46-87476..88195 [-], 720hypothetical protein
47-88270..88590 [+], 321hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins38Fasta
(1) Han X; Du XD; Southey L; Bulach DM; Seemann T; Yan XX; Bannam TL; Rood JI (2015). Functional analysis of a bacitracin resistance determinant located on ICECp1, a novel Tn916-like element from a conjugative plasmid in Clostridium perfringens. Antimicrob Agents Chemother. 59(11):6855-65. [PubMed:26282424] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU