ICEberg

ICE
Gene list
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I. Information of ICE

ICEberg ID	76
Name	ICESde3396
ICEO ID	ICEO_0000128
Organism	Streptococcus dysgalactiae subsp. equisimilis NS3396
Size (bp)	63668
GC content [Genome] (%)	38.14
Insertion site	-
Function	Cadmium resistance; arsenic resistance
Species that ICE can be transferred to	Hemolytic Streptococci
Nucleotide Sequence	EU142041 (complete ICE sequence in this GenBank file)
Replicon	-
Coordinates	1..63668
Putative oriT region	-
Putative relaxase	coordinates: 2134..3999; Locus tag: ICESde3396_04; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of ICESde3396 is not available.

The graph information of ICESde3396 components from EU142041

Complete gene list of ICESde3396 from EU142041
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	ICESde3396_01	1..1212 [-], 1212	site-specific recombinase
2	ICESde3396_02	1223..1450 [-], 228	hypothetical protein
3	ICESde3396_03	1729..1953 [-], 225	transcriptional regulator, Cro/CI family protein
4	ICESde3396_04	2134..3999 [-], 1866	relaxase	Relaxase, MOB_P Family
5	mobC	3986..4351 [-], 366	bacterial mobilization protein
6	ICESde3396_06	4358..4720 [-], 363	hypothetical protein
7	ICESde3396_07	5043..5150 [+], 108	hypothetical protein
8	ICESde3396_08	5211..5693 [+], 483	hypothetical protein
9	ICESde3396_09	5534..5875 [+], 342	transposase/integrase
10	cadA1	6150..8279 [-], 2130	probable cadmium efflux ATPase CadA
11	cadC1	8272..8640 [-], 369	cadmium efflux system accessory protein CadC
12	ICESde3396_12	8843..9142 [+], 300	hypothetical protein
13	ICESde3396_13	9196..9984 [-], 789	hypothetical protein
14	ICESde3396_14	9990..10589 [+], 600	putative membrane spanning protein
15	tcrB	10763..12850 [-], 2088	probable copper exporting ATPase TcrB-like protein
16	tcrZ	12989..13195 [-], 207	copper-transporting ATPase TcrZ-like protein
17	tcrA	13343..13819 [-], 477	copper-transporting ATPase TcrA-like protein
18	tcrY	13806..14252 [-], 447	transcriptional repressor TcrY-like protein
19	ICESde3396_19	14460..14552 [+], 93	hypothetical protein
20	cadC2	14710..15048 [-], 339	cadmium efflux system accessory protein CadC
21	cadD	15061..15717 [-], 657	cadmium resistance protein CadD
22	ICESde3396_22	15749..17311 [-], 1563	site-specific recombinase	Integrase
23	ICESde3396_23	17311..18222 [-], 912	site-specific recombinase
24	ICESde3396_24	18338..18499 [-], 162	phage lysin
25	ICESde3396_25	18608..20077 [-], 1470	amidase/ phage cell wall hydrolase
26	ICESde3396_26	20084..20479 [-], 396	holin
27	ICESde3396_27	20457..20663 [-], 207	hypothetical protein
28	cadC3	21300..21659 [+], 360	cadmium efflux system accessory protein CadC
29	cadA2	21656..23773 [+], 2118	cadmium efflux ATPase CadA
30	ICESde3396_30	24476..24706 [+], 231	hypothetical protein	YddH, T4SS component
31	ICESde3396_31	24819..25589 [-], 771	inner membrane transport permease YadH-like protein
32	ICESde3396_32	25582..26517 [-], 936	ABC transporter ATP-subunit YadG-like protein
33	ICESde3396_33	26672..26782 [-], 111	hypothetical protein
34	lpdA	26807..28480 [-], 1674	coenzyme A disulfide reductase LpdA
35	yqcL	28501..28713 [-], 213	arsenical resistance protein
36	arsA	28768..30510 [-], 1743	arsenical pump-driving ATPase ArsA
37	arsR1	30546..30893 [-], 348	arsenical resistance repressor ArsR
38	arsD	31027..31398 [-], 372	arsenical resistance trans-acting repressor ArsD
39	arsR2	31400..31666 [-], 267	arsenical resistance repressor ArsR
40	ICESde3396_40	31875..32558 [-], 684	transposase
41	ICESde3396_41	32841..33200 [-], 360	hypothetical protein
42	ICESde3396_42	33187..33576 [-], 390	hypothetical protein
43	ICESde3396_43	33573..33800 [-], 228	hypothetical protein
44	ICESde3396_44	33854..34930 [-], 1077	putative zinc finger protein
45	ICESde3396_45	34970..35608 [-], 639	hypothetical protein
46	ICESde3396_46	35704..35994 [-], 291	hypothetical protein
47	ICESde3396_47	36008..36307 [-], 300	hypothetical protein
48	ICESde3396_48	36378..43214 [-], 6837	SNF2-related helicase
49	ICESde3396_49	43251..43802 [-], 552	hypothetical protein
50	ICESde3396_50	43786..43977 [-], 192	calcium-binding protein
51	ICESde3396_52	43978..48873 [-], 4896	agglutinin receptor precursor	PrgB, T4SS component
52	ICESde3396_51	46772..46882 [+], 111	hypothetical protein
53	ICESde3396_53	49140..49742 [+], 603	abortive Infection Protein AbiGI
54	ICESde3396_54	49739..50584 [+], 846	abortive infection protein AbiGII
55	ICESde3396_55	50670..53471 [-], 2802	N-acetylmuramoyl-L-alanine amidase	PrgK, T4SS component
56	ICESde3396_56	53473..55824 [-], 2352	hypothetical protein	PrgJ, T4SS component
57	ICESde3396_57	56196..57050 [-], 855	hypothetical protein
58	ICESde3396_58	57069..57323 [-], 255	hypothetical protein
59	traG	57329..59146 [-], 1818	conjugal transfer protein TraG	T4CP
60	ICESde3396_60	59146..59670 [-], 525	hypothetical protein
61	ICESde3396_61	59711..60301 [-], 591	putative protease
62	ICESde3396_62	60298..60537 [-], 240	hypothetical protein
63	ICESde3396_63	60540..60929 [-], 390	hypothetical protein
64	ICESde3396_64	60934..61362 [-], 429	hypothetical protein
65	ICESde3396_65	61346..62701 [-], 1356	DNA methylase
66	ICESde3396_66	62850..63668 [-], 819	replication initiator

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	66	Fasta

(1) Davies MR; Shera J; Van Domselaar GH; Sriprakash KS; McMillan DJ (2009). A novel integrative conjugative element mediates genetic transfer from group G Streptococcus to other {beta}-hemolytic Streptococci. J Bacteriol. 191(7):2257-65. [PubMed:19168609]

experimental literature