 ICEberg ID | 73 |
Name  | ICEF-II  |
| ICEO ID | ICEO_0000717 |
| Organism | Mycoplasma fermentans PG18 |
| Size (bp) | 22331 |
| GC content [Genome] (%) | - |
| Insertion site | pdhA, orf251 |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | AY168955; AY168956; AY168957; AY168958; AY168960; AY168959; AY168961; AY168962; AY168963; AY168964; AY168965 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICEF-II components from AY168957 | |||||
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| Incomplete gene list of ICEF-II from AY168957 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..1413 [+], 1413 | hypothetical protein | ||
| 2 | - | 1489..2709 [+], 1221 | ORF406 | ||
| 3 | - | 3430..4149 [+], 720 | ICEF-IIB ORF1 | ||
| 4 | - | 4380..4571 [+], 192 | ICEF-IIB ORF2 | ||
| 5 | - | 4592..5794 [+], 1203 | putative relaxase | ||
| 6 | - | 5804..5983 [+], 180 | ICEF-IIB ORF6 | ||
The graph information of ICEF-II components from AY168956 | |||||
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| Incomplete gene list of ICEF-II from AY168956 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..2127 [+], 2127 | ICEF-IIA ORF19 | ||
| 2 | - | 2717..3643 [+], 927 | ICEF-IIA ORF21 | ||
| 3 | ICEF-IIA ORF22 | 3692..4857 [+], 1166 | - | ||
| 4 | - | 5233..5374 [-], 142 | putative ABC transporter ATP-binding cassette protein | ||
| 5 | tnp | 5510..5902 [-], 393 | IS3 family transposase | ||
The graph information of ICEF-II components from AY168955 | |||||
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| Incomplete gene list of ICEF-II from AY168955 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 38..724 [+], 687 | ORF228 | ||
| 2 | - | 2301..4403 [-], 2103 | ORF700 | ||
| 3 | ORF251 | 4507..5130 [-], 624 | - | ||
| 4 | - | 5373..6092 [+], 720 | ICEF-IIA ORF1 | ||
| 5 | - | 6323..6514 [+], 192 | ICEF-IIA ORF2 | ||
| 6 | - | 6535..7737 [+], 1203 | ICEF-IIA ORF3 | ||
| 7 | - | 7747..8214 [+], 468 | ICEF-IIA ORF4 | ||
| 8 | - | 8214..10433 [+], 2220 | ICEF-IIA ORF5 | T4CP | |
| 9 | - | 10444..10632 [+], 189 | ICEF-IIA ORF6 | ||
| 10 | - | 10634..10979 [+], 346 | ICEF-IIA ORF7 | ||
The graph information of ICEF-II components from AY168958 | |||||
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| Incomplete gene list of ICEF-II from AY168958 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..763 [+], 763 | ICEF-IIB ORF22 | Integrase | |
The graph information of ICEF-II components from AY168965 | |||||
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| Incomplete gene list of ICEF-II from AY168965 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..1479 [+], 1479 | ICEF-II ORF17 | T4CP | |
| 2 | - | 1460..2143 [+], 684 | ICEF-II ORF18 | ||
| 3 | - | 2189..4332 [+], 2144 | ICEF-II ORF19 | ||
The graph information of ICEF-II components from AY168964 | |||||
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| Incomplete gene list of ICEF-II from AY168964 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..1151 [+], 1151 | P57 lipoprotein | ||
| 2 | - | 1266..1547 [+], 282 | ICEF-II ORF15 | ||
| 3 | ICEF-II ORF16 | 1547..2736 [+], 1190 | - | ||
| 4 | - | 2752..5565 [+], 2814 | ICEF-II ORF17 | T4CP | |
The graph information of ICEF-II components from AY168963 | |||||
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| Incomplete gene list of ICEF-II from AY168963 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..103 [+], 103 | ICEF-II ORF12 | ||
| 2 | - | 103..357 [+], 255 | ICEF-II ORF13 | ||
| 3 | - | 381..1949 [+], 1569 | P57 lipoprotein | ||
| 4 | - | 2064..2345 [+], 282 | ICEF-II ORF15 | ||
| 5 | ICEF-II ORF16 | 2345..3534 [+], 1190 | - | ||
| 6 | - | 3550..4890 [+], 1341 | ICEF-II ORF17 | ||
The graph information of ICEF-II components from AY168962 | |||||
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| Incomplete gene list of ICEF-II from AY168962 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..608 [+], 608 | ICEF-II ORF7 | ||
| 2 | - | 617..856 [+], 240 | ICEF-II ORF8 | ||
| 3 | - | 869..1585 [+], 717 | ICEF-II ORF11 | ||
| 4 | - | 1595..2146 [+], 552 | ICEF-II ORF12 | ||
| 5 | - | 2146..2400 [+], 255 | ICEF-II ORF13 | ||
| 6 | - | 2424..2847 [+], 424 | P57 lipoprotein | ||
The graph information of ICEF-II components from AY168961 | |||||
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| Incomplete gene list of ICEF-II from AY168961 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..1648 [+], 1648 | ICEF-II ORF5 | T4CP | |
| 2 | - | 1659..1847 [+], 189 | ICEF-II ORF6 | ||
| 3 | - | 1849..2796 [+], 948 | ICEF-II ORF7 | ||
| 4 | - | 3057..3773 [+], 717 | ICEF-II ORF11 | ||
| 5 | - | 3783..4237 [+], 455 | ICEF-II ORF12 | ||
The graph information of ICEF-II components from AY168960 | |||||
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| Incomplete gene list of ICEF-II from AY168960 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..363 [-], 363 | ORF472 | ||
| 2 | - | 937..1656 [+], 720 | ICEF-IIC ORF1 | ||
| 3 | ICEF-IIC ORF2 | 1887..2078 [+], 192 | - | ||
| 4 | - | 2099..3301 [+], 1203 | ICEF-IIC ORF3 | ||
| 5 | - | 3311..3778 [+], 468 | ICEF-IIC ORF4 | ||
| 6 | - | 3778..4355 [+], 578 | ICEF-IIC ORF5 | ||
The graph information of ICEF-II components from AY168959 | |||||
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| Incomplete gene list of ICEF-II from AY168959 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1..763 [+], 763 | ICEF-IIC ORF22 | Integrase | |
| 2 | ORF242 | 1343..2072 [-], 730 | - | ||
 Flanking regions |
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(1) Calcutt MJ; Lewis MS; Wise KS (2002). Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18. J Bacteriol. 184(24):6929-41. [PubMed:12446643]
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| experimental literature |