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ICE
Gene list
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References
I. Information of ICE
ICEberg ID
72
Name
ICEF-I
ICEO ID
ICEO_0000161
Organism
Mycoplasma fermentans
PG18
Size (bp)
23773
GC content [Genome] (%)
28.63
Insertion site
pdhA, orf251
Function
-
Species that ICE can be transferred to
-
Nucleotide Sequence
AY168953
(complete ICE sequence in this GenBank file)
Replicon
-
Coordinates
2674..26451
Putative
oriT
region
-
Putative relaxase
-
II. ICE interaction with IME/CIME/
The interaction information of ICEF-I is not available.
The graph information of ICEF-I components from
AY168953
Complete gene list of ICEF-I from
AY168953
#
Gene
Coordinates [+/-], size (bp)
Product
(GenBank annotation)
*Reannotation
1
licA
18..746 [-], 729
LicA
2
lepA
834..2633 [+], 1800
LepA
3
-
2918..3637 [+], 720
ICEF-IA ORF1
4
-
3909..5111 [+], 1203
ICEF-IA ORF3
5
-
5121..5588 [+], 468
ICEF-IA ORF4
6
ICEF-IA ORF5
5588..7807 [+], 2220
-
7
-
7818..8006 [+], 189
ICEF-IA ORF6
8
-
8008..8955 [+], 948
ICEF-IA ORF7
9
-
8964..9152 [+], 189
ICEF-IA ORF8a
10
-
9142..10008 [+], 867
ICEF-IA ORF9
11
-
10079..10243 [+], 165
ICEF-IA ORF10
12
-
10259..10972 [+], 714
ICEF-IA ORF11
13
-
10982..11533 [+], 552
single-stranded DNA binding protein
14
-
11533..11787 [+], 255
ICEF-IA ORF13
15
-
11811..13379 [+], 1569
P57' lipoprotein
16
-
13494..13775 [+], 282
ICEF-IA ORF15
17
-
13775..14965 [+], 1191
ICEF-IA ORF16
18
-
14981..17794 [+], 2814
TraE/TrsE family NTPase
T4CP
19
-
17775..18461 [+], 687
ICEF-IA ORF18
20
ICEF-IA ORF18
18543..21851 [+], 3309
-
21
-
23223..23702 [+], 480
ICEF-IA ORF20
22
-
23935..24861 [+], 927
ICEF-IA ORF21
23
-
24909..26075 [+], 1167
ICEF-IA ORF22
Integrase
Gene may contribute to site-specific recombination
Element
No. of sequences
Download
Nucleotide sequences
1
Fasta
Proteins
19
Fasta
(1) Calcutt MJ; Lewis MS; Wise KS (2002). Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18.
J Bacteriol
. 184(24):6929-41. [
PubMed:12446643
]
experimental literature