ICEberg
I. Information of ICE
ICEberg ID680
Name ICE_SagNEM316_rplL This is a predicted ICE derived from literature
OrganismStreptococcus agalactiae NEM316
Size (bp)61693
GC content [Genome] (%)37.97
Insertion site3' rpIL
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAL732656 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1361845..1423537 
Putative oriT region -
Putative relaxase coordinates: 1383844..1385721; Gene: gbs1338;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICE_SagNEM316_rplL is not available.



The graph information of ICE_SagNEM316_rplL components from AL732656
Complete gene list of ICE_SagNEM316_rplL from AL732656
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1gbs13101356965..1357255 [+], 291Unknown
2gbs13121358178..1359992 [-], 1815Unknown
3gbs13131360408..1361643 [+], 1236Unknown
4gbs13141361845..1363026 [-], 1182Unknown
5gbs13151363044..1363247 [-], 204Unknown
6gbs13161363281..1363847 [-], 567Unknown
7gbs13181364285..1364593 [-], 309Unknown
8gbs13201365168..1365671 [-], 504UnknownYdcQ, T4SS component 
9gbs13211365671..1365985 [-], 315Unknown
10gbs13221366220..1367425 [-], 1206unknown
11gbs13231367477..1367968 [-], 492Unknown
12gbs13241367982..1371593 [-], 3612Unknown
13gbs13251371930..1373129 [-], 1200UnknownIntegrase 
14gbs13261373132..1373449 [-], 318unknown
15gbs13271373653..1373874 [-], 222Unknown
16gbs13281374099..1374992 [-], 894unknown
17gbs13291375092..1376498 [-], 1407unknown
18gbs13301376585..1378291 [-], 1707unknown
19gbs13311378291..1378608 [-], 318unknown
20gbs13321378637..1379470 [-], 834Unknown
21gbs13331379863..1380843 [-], 981unknown
22gbs13341380848..1381777 [-], 930unknown
23gbs13351381790..1382305 [-], 516Unknown
24gbs13361382322..1382747 [-], 426Unknown
25gbs13371382934..1383689 [-], 756unknown
26gbs13381383844..1385721 [-], 1878UnknownRelaxase, MOBP Family
27gbs13391385708..1386073 [-], 366unknown
28gbs13401386083..1386442 [-], 360unknown
29gbs13411386777..1388795 [-], 2019unknown
30gbs13421388799..1391039 [-], 2241Unknown
31gbs13431391052..1391822 [-], 771Unknown
32gbs13441391822..1392298 [-], 477unknown
33gbs13451392368..1392658 [-], 291Unknown
34gbs13461392705..1393094 [-], 390unknown
35gbs13471393091..1393321 [-], 231unknown
36gbs13481393376..1394461 [-], 1086unknown
37gbs13491394502..1395140 [-], 639unknownPrgL, T4SS component 
38gbs13501395305..1395604 [-], 300Unknown
39gbs13511395615..1395914 [-], 300unknown
40gbs13521395986..1402186 [-], 6201Unknown
41gbs13531402190..1402783 [-], 594unknown
42gbs13541402834..1403385 [-], 552unknown
43gbs13551403369..1403560 [-], 192unknown
44gbs13561403561..1408465 [-], 4905UnknownPrgB, T4SS component 
45gbs13571408678..1409268 [+], 591unknown
46gbs13581409265..1410113 [+], 849unknown
47gbs13591410217..1413012 [-], 2796UnknownPrgK, T4SS component 
48gbs13601413014..1415359 [-], 2346UnknownPrgJ, T4SS component 
49gbs13611415316..1415669 [-], 354Unknown
50gbs13621415731..1416585 [-], 855UnknownPrgH, T4SS component 
51gbs13631416602..1416844 [-], 243Unknown
52gbs13641416864..1418681 [-], 1818UnknownT4CP 
53gbs13651418681..1419169 [-], 489unknown
54gbs13661419250..1419831 [-], 582Unknown
55gbs13671419834..1420067 [-], 234unknown
56gbs13681420064..1420450 [-], 387unknown
57gbs13691420443..1420889 [-], 447unknown
58gbs13701420873..1422225 [-], 1353unknown
59gbs13711421652..1422074 [-], 423unknown
60gbs13721422311..1423126 [-], 816unknown
61gbs13731423123..1423296 [-], 174unknown
62rplL1423537..1423902 [-], 366ribosomal protein L7/L12
63rplJ1423966..1424466 [-], 501Ribosomal protein L10
64gbs13761424900..1427008 [+], 2109unknown
65gbs13771427102..1428046 [-], 945unknown
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins58Fasta
(1) Ambroset C; Coluzzi C; Guedon G; Devignes MD; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2015). New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration. Front Microbiol. 1.279861111. [PubMed:26779141] in_silico
(2) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PubMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU