ICEberg
I. Information of ICE
ICEberg ID68
Name ICE6013 This ICE is derived from experimental literature
ICEO ID ICEO_0000123
OrganismStaphylococcus aureus HDG2
Size (bp)19905
GC content [Genome] (%)29.62
Insertion site-
Function-
Species that ICE can be transferred toStaphylococcus aureus
Nucleotide SequenceFJ231270 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..19905 
Putative oriT region -
Putative relaxase coordinates: 17516..18607;   Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICE6013 is not available.



The graph information of ICE6013 components from FJ231270
Complete gene list of ICE6013 from FJ231270
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-221..574 [-], 354Tra8
2-858..1673 [-], 816unknown
3-1666..3108 [-], 1443unknownIntegrase 
4-3080..3673 [-], 594BinL
5-3937..4317 [-], 381BlaI
6-4307..6064 [-], 1758BlaR1
7-6171..7016 [+], 846BlaZAR 
8-7277..7792 [-], 516Tra8
9-7901..8257 [-], 357hypothetical protein
10-8313..8903 [-], 591hypothetical protein
11-8910..9956 [-], 1047unknownPrgK, T4SS component 
12-9946..11793 [-], 1848ribonuclease E domain proteinYddG, T4SS component 
13-11798..13156 [-], 1359FtsKYdcQ, T4SS component 
14-13210..15705 [-], 2496VirB4YddE, T4SS component 
15-15740..16123 [-], 384hypothetical proteinYddD, T4SS component 
16-16135..16395 [-], 261hypothetical proteinYddC, T4SS component 
17-16400..17455 [-], 1056hypothetical proteinYddB, T4SS component 
18-17516..18607 [-], 1092RstARelaxase, MOBT Family
19-18782..19084 [-], 303hypothetical protein
20-19098..19418 [-], 321unknown
21-19569..19853 [-], 285hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Smyth DS; Robinson DA (2009). Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus. J Bacteriol. 191(19):5964-75. [PubMed:19648240] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU