 ICEberg ID | 68 |
Name  | ICE6013  |
| ICEO ID | ICEO_0000123 |
| Organism | Staphylococcus aureus HDG2 |
| Size (bp) | 19905 |
| GC content [Genome] (%) | 29.62 |
| Insertion site | - |
| Function | - |
| Species that ICE can be transferred to | Staphylococcus aureus |
| Nucleotide Sequence | FJ231270 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..19905 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 17516..18607; Family: MOBT |
The graph information of ICE6013 components from FJ231270 | |||||
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| Complete gene list of ICE6013 from FJ231270 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 221..574 [-], 354 | Tra8 | ||
| 2 | - | 858..1673 [-], 816 | unknown | ||
| 3 | - | 1666..3108 [-], 1443 | unknown | Integrase | |
| 4 | - | 3080..3673 [-], 594 | BinL | ||
| 5 | - | 3937..4317 [-], 381 | BlaI | ||
| 6 | - | 4307..6064 [-], 1758 | BlaR1 | ||
| 7 | - | 6171..7016 [+], 846 | BlaZ | AR | |
| 8 | - | 7277..7792 [-], 516 | Tra8 | ||
| 9 | - | 7901..8257 [-], 357 | hypothetical protein | ||
| 10 | - | 8313..8903 [-], 591 | hypothetical protein | ||
| 11 | - | 8910..9956 [-], 1047 | unknown | PrgK, T4SS component | |
| 12 | - | 9946..11793 [-], 1848 | ribonuclease E domain protein | YddG, T4SS component | |
| 13 | - | 11798..13156 [-], 1359 | FtsK | YdcQ, T4SS component | |
| 14 | - | 13210..15705 [-], 2496 | VirB4 | YddE, T4SS component | |
| 15 | - | 15740..16123 [-], 384 | hypothetical protein | YddD, T4SS component | |
| 16 | - | 16135..16395 [-], 261 | hypothetical protein | YddC, T4SS component | |
| 17 | - | 16400..17455 [-], 1056 | hypothetical protein | YddB, T4SS component | |
| 18 | - | 17516..18607 [-], 1092 | RstA | Relaxase, MOBT Family | |
| 19 | - | 18782..19084 [-], 303 | hypothetical protein | ||
| 20 | - | 19098..19418 [-], 321 | unknown | ||
| 21 | - | 19569..19853 [-], 285 | hypothetical protein | ||
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(1) Smyth DS; Robinson DA (2009). Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus. J Bacteriol. 191(19):5964-75. [PubMed:19648240]
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| experimental literature |