ICEberg
I. Information of ICE
ICEberg ID671
Name ICE_COH1_guaA This is a predicted ICE derived from literature
OrganismStreptococcus agalactiae COH1
Size (bp)-
GC content [Genome] (%)-
Insertion siteguaA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAJR01000021 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 30003..31187; Locus tag: SAN_1060;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICE_COH1_guaA is not available.



The graph information of ICE_COH1_guaA components from AAJR01000021
Incomplete gene list of ICE_COH1_guaA from AAJR01000021
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SAN_10819245..9988 [-], 744acetyltransferase, GNAT family
2gid10066..11400 [-], 1335gid protein
3SAN_107911514..12212 [-], 699transcriptional regulator, GntR family
4guaA12425..13987 [+], 1563GMP synthase
5SAN_107714055..15248 [-], 1194site-specific recombinase, phage integrase familyIntegrase 
6SAN_107615275..15520 [-], 246conserved hypothetical protein
7SAN_107515971..16201 [-], 231conserved hypothetical protein
8SAN_107416198..16764 [-], 567conserved hypothetical protein
9SAN_107317152..17505 [+], 354Tn916, transcriptional regulator, putative
10SAN_107217849..19768 [-], 1920tetracycline resistance protein (tetM)AR 
11SAN_107120145..20993 [-], 849TN916 ORF13-like protein lmo1103Orf13_Tn, T4SS component 
12SAN_107021091..22113 [-], 1023TN916 ORF14-like protein lmo1104Orf14_Tn, T4SS component 
13SAN_106922110..24137 [-], 2028membrane protein, putativeOrf15_Tn, T4SS component 
14SAN_106824134..26587 [-], 2454ATP/GTP-binding protein, putativeOrf16_Tn, T4SS component 
15SAN_106726571..27008 [-], 438TN916 ORF17-like protein lmo1107Orf17_Tn, T4SS component 
16SAN_106627037..28062 [-], 1026hypothetical protein
17SAN_106527711..27803 [+], 93hypothetical protein
18SAN_106428134..28634 [-], 501TN916 ORF18-like protein lmo1108
19SAN_106328695..29357 [-], 663conserved hypothetical protein
20SAN_106229516..29737 [-], 222conserved hypothetical proteinOrf19_Tn, T4SS component 
21SAN_106129734..30006 [-], 273conserved hypothetical protein
22SAN_106030003..31187 [-], 1185transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
23SAN_105931369..32772 [-], 1404TN916 ORF21-like protein lmo1112Orf21_Tn, T4SS component 
24SAN_105832583..32741 [+], 159hypothetical protein
25SAN_105732710..32802 [+], 93hypothetical protein
26SAN_105632794..33567 [-], 774conserved hypothetical protein
27SAN_105533577..33954 [-], 378conserved hypothetical protein
28SAN_105433975..34289 [-], 315uncharacterized conserved protein CAC1439
29kefB34866..35019 [+], 154Na+/H+ exchanger family protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PubMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU