ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	668
Name	ICE_2603_tRNALys
Organism	Streptococcus agalactiae 2603V/R
Size (bp)	42898
GC content [Genome] (%)	32.23[35.65]
Insertion site	3' tRNAlys
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AE009948 (complete ICE sequence in this genome)
Replicon	-
Genome coordinates	1962397..2005294
Putative oriT region	-
Putative relaxase	coordinates: 1990885..1992174; Locus tag: SAG2017; Family: MOB_T

II. ICE interaction with IME/CIME/

The interaction information of ICE_2603_tRNALys is not available.

The graph information of ICE_2603_tRNALys components from AE009948

Complete gene list of ICE_2603_tRNALys from AE009948
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SAG1972	1957541..1958257 [+], 717	transcriptional regulator, MerR family
2	SAG1973	1958296..1958766 [-], 471	acetyltransferase, GNAT family
3	SAG1974	1958738..1959196 [-], 459	MutT/nudix family protein
4	SAG1975	1959183..1959326 [-], 144	hypothetical protein
5	SAG1976	1959332..1959802 [-], 471	conserved hypothetical protein
6	SAG1977	1960129..1960620 [+], 492	acetyltransferase, GNAT family
7	SAG1978	1960613..1961881 [+], 1269	ATPase, AAA family
8	SAG1979	1962397..1963158 [-], 762	membrane protein, putative
9	SAG1980	1963155..1964057 [-], 903	ABC transporter, ATP-binding protein
10	SAG1981	1964054..1964260 [-], 207	hypothetical protein
11	SAG1982	1964250..1965329 [-], 1080	transcriptional regulator, Cro/CI family
12	SAG1983	1965710..1966027 [+], 318	conserved hypothetical protein
13	SAG1984	1966024..1966590 [+], 567	conserved hypothetical protein TIGR00730
14	SAG1985	1966644..1966799 [-], 156	hypothetical protein
15	SAG1986	1966825..1967952 [-], 1128	site-specific recombinase, phage integrase family	Integrase
16	SAG1987	1967956..1968141 [-], 186	conserved hypothetical protein
17	SAG1988	1968202..1969230 [-], 1029	conserved hypothetical protein
18	SAG1989	1969233..1969652 [-], 420	hypothetical protein
19	SAG1990	1969978..1970361 [-], 384	hypothetical protein
20	SAG1991	1970585..1971199 [+], 615	transcriptional regulator, Cro/CI family
21	SAG1992	1971372..1972928 [-], 1557	protein of unknown function
22	SAG1993	1973269..1974390 [-], 1122	site-specific recombinase, phage integrase family
23	SAG1994	1974440..1974766 [-], 327	conserved hypothetical protein
24	SAG1995	1974959..1975591 [-], 633	hypothetical protein
25	SAG1996	1975672..1976463 [-], 792	cell wall surface anchor family protein, putative	PrgC, T4SS component
26	SAG1997	1976480..1977028 [-], 549	hypothetical protein
27	SAG1998	1977028..1978401 [-], 1374	hypothetical protein	PrgK, T4SS component
28	SAG1999	1978564..1978707 [+], 144	hypothetical protein
29	SAG2000	1978897..1980897 [-], 2001	membrane protein, putative	YddG, T4SS component
30	SAG2001	1980913..1983183 [-], 2271	conjugal transfer protein, interruption-C	YddE, T4SS component
31	SAG2002	1983230..1983619 [-], 390	IS1381, transposase OrfB
32	SAG2003	1983652..1984035 [-], 384	IS1381, transposase OrfA
33	SAG2005	1984296..1984706 [-], 411	conserved hypothetical protein	YddD, T4SS component
34	SAG2006	1984717..1984983 [-], 267	conserved hypothetical protein
35	SAG2007	1985004..1985957 [-], 954	conserved hypothetical protein	YddB, T4SS component
36	SAG2008	1986010..1986264 [-], 255	conserved hypothetical protein
37	SAG2009	1986257..1986523 [-], 267	conserved hypothetical protein
38	SAG2010	1986668..1987141 [-], 474	hypothetical protein
39	SAG2011	1987149..1987631 [-], 483	conserved hypothetical protein
40	SAG2012	1987684..1987956 [-], 273	hypothetical protein
41	SAG2013	1988091..1988660 [-], 570	hypothetical protein
42	SAG2014	1988663..1990012 [-], 1350	hypothetical protein
43	SAG2015	1990209..1990508 [-], 300	transcriptional regulator, Cro/CI family
44	SAG2016	1990492..1990869 [-], 378	hypothetical protein
45	SAG2017	1990885..1992174 [-], 1290	transcriptional regulator, Cro/CI family	Relaxase, MOB_T Family
46	SAG2018	1992405..1994066 [-], 1662	FtsK/SpoIIIE family protein	YdcQ, T4SS component
47	SAG2019	1994143..1994604 [-], 462	hypothetical protein
48	SAG2020	1994626..1994922 [-], 297	hypothetical protein
49	SAG2021	1994982..1997462 [-], 2481	cell wall surface anchor family protein	PrgB, T4SS component
50	SAG2022	1997467..1998720 [-], 1254	transposase, ISL3 family
51	merA-2	1998880..2000520 [-], 1641	mercuric reductase
52	merR-2	2000549..2000941 [-], 393	mercuric resistance operon regulatory protein MerR
53	SAG2025	2001647..2003215 [+], 1569	Mn2+/Fe2+ transporter, NRAMP family
54	SAG2026	2003783..2004505 [-], 723	membrane protein, putative
55	SAG2027	2004509..2005126 [-], 618	ABC transporter, ATP-binding protein
56	SAG2028	2005184..2005294 [-], 111	conserved hypothetical protein
57	SAG2029	2005813..2006667 [-], 855	streptomycin resistance protein
58	SAG2030	2006846..2007238 [-], 393	hypothetical protein
59	SAG2031	2007673..2008281 [-], 609	hypothetical protein
60	SAG2032	2008268..2008603 [-], 336	conserved hypothetical protein
61	SAG2033	2009125..2009613 [-], 489	acetyltransferase, GNAT family

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	49	Fasta

(1) Ambroset C; Coluzzi C; Guedon G; Devignes MD; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2015). New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration. Front Microbiol. 1.279861111. [PubMed:26779141]

(2) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PubMed:18708498]

experimental literature

in silico analysis literature