 ICEberg ID | 667 |
Name  | ICE_18RS21_tRNALys  |
| Organism | Streptococcus agalactiae 18RS21 |
| Size (bp) | - |
| GC content [Genome] (%) | - |
| Insertion site | tRNALys |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | AAJO01000111; AAJO01000216; AAJO01000250; AAJO01000211; AAJO01000171; AAJO01000087; AAJO01000061; AAJO01000042 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICE_18RS21_tRNALys components from AAJO01000111 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000111 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1893 | 297..788 [+], 492 | acetyl transferase | ||
| 2 | SAJ_1894 | 781..2049 [+], 1269 | ATPase, AAA family | ||
| 3 | SAJ_1896 | 2504..3625 [-], 1122 | site-specific recombinase, phage integrase family | Integrase | |
| 4 | SAJ_1897 | 3675..4001 [-], 327 | Domain of unknown function (DUF771) superfamily | ||
| 5 | SAJ_1898 | 4194..4826 [-], 633 | conserved hypothetical protein | ||
| 6 | SAJ_1899 | 4907..5698 [-], 792 | cell surface protein A | PrgC, T4SS component | |
| 7 | SAJ_1900 | 5715..5912 [-], 198 | conserved hypothetical protein | ||
The graph information of ICE_18RS21_tRNALys components from AAJO01000216 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000216 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1901 | 141..1408 [+], 1268 | CHAP domain superfamily | ||
The graph information of ICE_18RS21_tRNALys components from AAJO01000250 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000250 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1903 | 13..1086 [+], 1074 | membrane protein, putative | YddG, T4SS component | |
The graph information of ICE_18RS21_tRNALys components from AAJO01000211 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000211 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1904 | 26..1420 [+], 1395 | conjugal transfer protein, interruption-C | YddE, T4SS component | |
The graph information of ICE_18RS21_tRNALys components from AAJO01000171 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000171 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1908 | 60..980 [+], 921 | conserved hypothetical protein | YddB, T4SS component | |
| 2 | SAJ_1907 | 1001..1267 [+], 267 | conserved hypothetical protein | ||
| 3 | SAJ_1906 | 1278..1688 [+], 411 | conserved hypothetical protein | YddD, T4SS component | |
| 4 | SAJ_1905 | 1709..2337 [+], 629 | conjugal transfer protein, interruption-C | YddE, T4SS component | |
The graph information of ICE_18RS21_tRNALys components from AAJO01000087 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000087 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1909 | 1..509 [-], 509 | conserved hypothetical protein | ||
| 2 | SAJ_1910 | 512..1861 [-], 1350 | Transporter | ||
| 3 | SAJ_1911 | 2058..2357 [-], 300 | transcriptional regulator, Cro/CI family | ||
| 4 | SAJ_1912 | 2341..2718 [-], 378 | conserved hypothetical protein | ||
| 5 | SAJ_1913 | 2734..3966 [-], 1233 | transcriptional regulator, Cro/CI family | Relaxase, MOBT Family | |
| 6 | SAJ_1914 | 4200..5339 [-], 1140 | site-specific recombinase, phage integrase family | Integrase | |
| 7 | SAJ_1915 | 5326..5529 [-], 204 | conserved hypothetical protein | ||
| 8 | repE | 5526..6518 [-], 993 | replication protein | ||
| 9 | SAJ_1917 | 6745..6927 [-], 183 | hypothetical protein | ||
| 10 | SAJ_1918 | 7176..7469 [+], 294 | transcription regulator | ||
The graph information of ICE_18RS21_tRNALys components from AAJO01000061 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000061 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | merA | 1..1205 [+], 1205 | mercuric reductase | ||
| 2 | SAJ_1920 | 1787..3448 [-], 1662 | FtsK/SpoIIIE family protein | YdcQ, T4SS component | |
| 3 | SAJ_1921 | 3525..3782 [-], 258 | Macrophage colony stimulating factor I receptor precursor (CSF-1-R)(EC 2.7.1.112) (Fms proto-oncogene) (c-fms) | ||
| 4 | SAJ_1922 | 3769..3981 [-], 213 | conserved hypothetical protein | ||
| 5 | SAJ_1923 | 4003..4299 [-], 297 | conserved hypothetical protein | ||
| 6 | SAJ_1924 | 4359..6866 [-], 2508 | cell wall surface anchor family protein | PrgB, T4SS component | |
| 7 | SAJ_1925 | 6844..8097 [-], 1254 | transposase, ISL3 family | ||
| 8 | merA | 8257..9897 [-], 1641 | mercuric reductase | ||
| 9 | merR | 9926..10318 [-], 393 | Hg(II)-responsive transcriptional regulator | ||
| 10 | SAJ_1928 | 11024..11272 [+], 249 | Mn2+/Fe2+ transporter, NRAMP family | ||
The graph information of ICE_18RS21_tRNALys components from AAJO01000042 | |||||
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| Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000042 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | SAJ_1929 | 415..1983 [+], 1569 | Mn2+/Fe2+ transporter, NRAMP family | ||
| 2 | SAJ_1930 | 2551..3273 [-], 723 | membrane protein, putative | ||
| 3 | SAJ_1931 | 3277..3894 [-], 618 | ABC transporter (ATP-binding protein)-like protein yydI | ||
| 4 | str | 4581..5435 [-], 855 | Aminoglycoside 6-adenylyltransferase | ||
| 5 | SAJ_1933 | 6441..7049 [-], 609 | conserved hypothetical protein | ||
| 6 | SAJ_1934 | 7036..7371 [-], 336 | Transcriptional regulator, PadR family | ||
| 7 | SAJ_1935 | 7893..8444 [-], 552 | acetyltransferase, GNAT family | ||
 Flanking regions |
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PubMed:18708498] 
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| experimental literature |
| in silico analysis literature |