ICEberg
I. Information of ICE
ICEberg ID66
Name CTnscr94 This ICE is derived from experimental literature
ICEO ID ICEO_0000172
OrganismSalmonella enterica subsp. enterica serovar Senftenberg, 5494-57
Size (bp)114347
GC content [Genome] (%)54.95
Insertion sitetRNA-Phe
FunctionA sucrose metabolic pathway
Species that ICE can be transferred toEscherichia coli
Nucleotide SequenceFN298496 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates11966..126312 
Putative oriT region -
Putative relaxase coordinates: 123447..124991; Locus tag: CTnscr_003;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of CTnscr94 is not available.



The graph information of CTnscr94 components from FN298496
Complete gene list of CTnscr94 from FN298496
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1CTnscr_1087932..8864 [+], 933putative leader peptidase
2CTnscr_1078930..9340 [+], 411putative lipoprotein
3CTnscr_1069487..10353 [+], 867putative general secretion pathway protein
4CTnscr_10510386..11279 [+], 894putative general secretion pathway protein L
5CTnscr_10411281..11817 [+], 537putative general secretion pathway protein M
6CTnscr_10312140..13117 [+], 978conserved hypothetical protein
7CTnscr_102a13130..13363 [+], 234hypothetical protein
8dnaB13356..14708 [+], 1353replicative dna helicase
9CTnscr_10114708..16426 [+], 1719conserved hypothetical protein
10traR16410..16667 [+], 258putative zinc finger protein
11CTnscr_10016660..17406 [+], 747conserved hypothetical protein
12CTnscr_09917494..18093 [+], 600conserved hypothetical protein
13CTnscr_09818093..18329 [+], 237conserved hypothetical protein
14CTnscr_09718412..19635 [+], 1224conserved hypothetical protein
15CTnscr_09619648..20250 [+], 603hypothetical protein
16CTnscr_09520329..21057 [+], 729conserved hypothetical protein
17topB21076..23091 [+], 2016DNA topoisomerase
18CTnscr_09323751..24248 [+], 498conserved hypothetical protein
19-24321..24524 [+], 204conserved hypothetical protein
20ssB24542..25081 [+], 540single-stranded dna-binding protein
21CTnscr_09125183..25614 [+], 432conserved hypothetical protein
22-25788..25970 [+], 183hypothetical protein
23CTnscr_09026036..26275 [+], 240conserved hypothetical protein
24-26359..26556 [+], 198hypothetical protein
25pilL26817..28130 [+], 1314putative type IV pilus proteinTfc2, T4SS component 
26pilM28132..28575 [+], 444putative exported protein
27pilN28591..30279 [+], 1689putative pilus assembly protein
28pilO30279..31595 [+], 1317putative pilus assembly protein
29pilP31582..32136 [+], 555putative pilus protein
30pilQ32148..33689 [+], 1542putative nucleotide binding protein
31pilR33682..34794 [+], 1113putative membrane protein
32pilS34813..35409 [+], 597putative prepilin
33pilT35413..35892 [+], 480putative membrane proteinOrf169_F, T4SS component 
34pilU35889..36542 [+], 654prepilin peptidase
35pilV36556..37896 [+], 1341prepilin
36CTnscr_07739114..40613 [+], 1500putative transposase
37CTnscr_07640610..41374 [+], 765putative insertion sequence proteinTrbB, T4SS component 
38rci41901..43016 [+], 1116shufflon-specific DNA recombinaseIntegrase 
39CTnscr_07343120..44004 [+], 885putative membrane protein
40CTnscr_07244023..44748 [+], 726putative exported proteinTfc3, T4SS component 
41CTnscr_07144727..45335 [+], 609putative soluble lytic transglycosylaseTfc4, T4SS component 
42CTnscr_07045332..45844 [+], 513putative exported proteinTfc5, T4SS component 
43CTnscr_06945841..46506 [+], 666putative type II restriction endonuclease
44CTnscr_06846836..47633 [+], 798conserved hypothetical protein
45CTnscr_06747630..49750 [+], 2121conserved hypothetical proteinTfc6, T4SS component 
46CTnscr_06649737..50495 [+], 759putative membrane proteinTfc8, T4SS component 
47CTnscr_06550965..52059 [-], 1095putative DNA binding protein
48CTnscr_06452091..52684 [-], 594conserved hypothetical protein
49-52778..52957 [-], 180hypothetical protein
50-53045..53305 [-], 261hypothetical protein
51CTnscr_06353419..53733 [+], 315putative exported proteinTfc9, T4SS component 
52CTnscr_062a53730..53969 [+], 240putative membrane protein
53CTnscr_06253984..54358 [+], 375putative membrane proteinTfc10, T4SS component 
54api3454368..54742 [+], 375putative membrane proteinTfc11, T4SS component 
55CTnscr_06054739..55398 [+], 660putative membrane proteinTfc12, T4SS component 
56CTnscr_05955398..56276 [+], 879putative exported proteinTfc13, T4SS component 
57CTnscr_05856273..57808 [+], 1536putative membrane proteinTfc14, T4SS component 
58CTnscr_057a57822..58076 [+], 255hypothetical protein
59CTnscr_05758067..58471 [+], 405putative lipoproteinTfc15, T4SS component 
60CTnscr_05658471..61302 [+], 2832conserved hypothetical proteinTfc16, T4SS component 
61CTnscr_05561299..61703 [+], 405conserved hypothetical proteinTfc17, T4SS component 
62CTnscr_05461796..62281 [-], 486conserved hypothetical protein
63CTnscr_05362632..62844 [-], 213putative transcriptional regulator, PerC family
64CTnscr_05262991..65378 [+], 2388conserved hypothetical protein
65CTnscr_05165517..66035 [+], 519conserved hypothetical protein
66CTnscr_05066904..67305 [+], 402putative exported proteinTfc24, T4SS component 
67CTnscr_04967302..68273 [+], 972putative exported proteinTfc23, T4SS component 
68CTnscr_04868285..69709 [+], 1425putative exported proteinTfc22, T4SS component 
69CTnscr_04769706..70074 [+], 369putative membrane protein
70CTnscr_04670071..71636 [+], 1566putative membrane proteinTfc19, T4SS component 
71CTnscr_04571666..72046 [-], 381hypothetical protein
72CTnscr_04472635..73054 [-], 420hypothetical protein
73CTnscr_04373377..73802 [-], 426hypothetical protein
74CTnscr_04273852..74775 [+], 924hypothetical protein
75CTnscr_04174995..76884 [+], 1890putative restriction endonuclease, alpha subunit
76CTnscr_04076871..77833 [+], 963putative restriction endonuclease, beta subunit
77scrK78143..79069 [+], 927fructokinase
78scrY79226..80743 [+], 1518sucrose porin precursor
79scrA80788..82158 [+], 1371sucrose transporter
80scrB82158..83567 [+], 1410sucrose-6-phosphate hydrolase
81scrR83597..84616 [+], 1020sucrose operon repressor
82CTnscr_03485214..86905 [+], 1692putative two-partner secretion family protein
83CTnscr_03386918..97285 [+], 10368putative adhesin
84CTnscr_03297289..97624 [+], 336conserved hypothetical protein
85CTnscr_031a97684..98025 [+], 342hypothetical protein
86CTnscr_03198077..99393 [+], 1317putative ion channel
87CTnscr_030100391..101281 [+], 891conserved hypothetical protein
88CTnscr_029101909..102298 [+], 390hypothetical protein
89CTnscr_028102292..102741 [+], 450hypothetical protein
90CTnscr_026103306..103917 [+], 612conserved hypothetical protein
91CTnscr_025104543..109973 [+], 5431conserved hypothetical protein (pseudogene)
92CTnscr_024105631..106578 [+], 948conserved hypothetical protein
93CTnscr_022107221..107829 [+], 609putative IS element protein
94CTnscr_021107826..108173 [+], 348putative insertion sequence protein
95CTnscr_020108193..109749 [+], 1557putative transposase
96CTnscr_018110180..111964 [+], 1785conserved hypothetical protein
97CTnscr_017111945..112613 [-], 669hypothetical protein
98CTnscr_016113155..113574 [-], 420hypothetical protein
99CTnscr_015113609..115285 [-], 1677putative methyl-accepting chemotaxis protein
100CTnscr_014115425..115700 [+], 276putative transposase
101CTnscr_013115619..116122 [+], 504putative transposase
102CTnscr_012117361..117762 [-], 402conserved hypothetical protein
103CTnscr_011117779..118258 [-], 480putative DNA binding protein
104CTnscr_010118509..119168 [-], 660hypothetical protein
105CTnscr_009119189..119410 [-], 222hypothetical protein
106CTnscr_008119394..119708 [-], 315putative lipoprotein
107CTnscr_007119863..120105 [-], 243hypothetical protein
108traF120167..121369 [-], 1203Type IV pilus protein, TraF
109CTnscr_005121474..122499 [-], 1026putative type IV pilus protein, traE
110CTnscr_004122696..123259 [-], 564putative membrane protein-pilK-like
111CTnscr_003123447..124991 [+], 1545putative helicase /relaxaseRelaxase, MOBH Family
112CTnscr_002125030..125989 [+], 960putative phage integrase
113CTnscr_001126494..127201 [-], 708putative membrane protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins106Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PubMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
(3) Hochhut B; Jahreis K; Lengeler JW; Schmid K (1997). CTnscr94, a conjugative transposon found in enterobacteria. J Bacteriol. 179(7):2097-102. [PubMed:9079891] experimental
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU