ICEberg
I. Information of ICE
ICEberg ID642
Name CMGEYY060816 This is a predicted ICE derived from literature
OrganismStreptococcus suis YY060816
Size (bp)125,757
GC content [Genome] (%)39.06
Insertion siterum
FunctionAntibiotic resistance genes: aph(3')-III, sat4, sat4, erm(B), mef(A), msr(D), tet(O), tet(40)
Species that ICE can be transferred to-
Nucleotide SequenceKX077898 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1320..127076 
Putative oriT region -
Putative relaxase coordinates: 108949..110832;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CMGEYY060816 is not available.



The graph information of CMGEYY060816 components from KX077898
Complete gene list of CMGEYY060816 from KX077898
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-1746..1916 [+], 171hypothetical protein
2mefA2303..3520 [+], 1218macrolide-efflux proteinAR 
3msrD3640..5103 [+], 1464ATPase component of ABC transporter
4-5221..5520 [-], 300hypothetical protein
5-5507..5875 [-], 369hypothetical protein
6-5872..7287 [-], 1416ImpB/MucB/SamB family protein
7-7292..7420 [-], 129hypothetical protein
8-7410..7637 [-], 228hypothetical protein
9-7640..8329 [-], 690pleiotropic regulator of exopolysaccharide
10-8605..10428 [+], 1824hypothetical protein
11-10762..11331 [+], 570hypothetical protein
12-11370..13325 [-], 1956DNA polymerase I
13-13374..13541 [-], 168hypothetical protein
14-13560..14108 [-], 549hypothetical protein
15-14113..15153 [-], 1041hypothetical protein
16-15227..15550 [-], 324hypothetical protein
17-15525..15659 [-], 135hypothetical protein
18-15949..18234 [+], 2286DNA primase/helicase
19-18519..18800 [+], 282hypothetical protein
20-18781..20157 [+], 1377DNA helicase
21-20150..20626 [+], 477hypothetical protein
22-20821..21003 [+], 183hypothetical protein
23-21048..22085 [+], 1038S-adenosylmethionine synthetase
24-22087..22452 [+], 366holin
25-22751..23212 [+], 462zinc-finger protein
26-23184..24437 [+], 1254adenine-specific methyltransferase
27-24437..24670 [+], 234hypothetical protein
28-25023..26297 [+], 1275DNA-cytosine methyltransferase
29-26343..26624 [+], 282hypothetical protein
30-26626..26838 [+], 213hypothetical protein
31-26840..27070 [+], 231hypothetical protein
32-27122..27595 [+], 474terminase small subunit
33-27592..29184 [+], 1593terminase large subunit
34-29244..29546 [+], 303plasmid stabilization system antitoxin protein
35-29546..29884 [+], 339death on curing protein
36-30021..30365 [+], 345hypothetical protein
37-30423..31706 [+], 1284portal protein
38-31699..32394 [+], 696protease-like protein
39-32413..33618 [+], 1206major capsid protein
40-33618..33878 [+], 261hypothetical protein
41-33878..34216 [+], 339hypothetical protein
42-34209..34577 [+], 369hypothetical protein
43-34599..34910 [+], 312hypothetical protein
44-34912..35481 [+], 570hypothetical protein
45-35492..35911 [+], 420hypothetical protein
46-35944..36075 [+], 132hypothetical protein
47-36094..38952 [+], 2859tail length tape-measure protein
48-38949..39671 [+], 723hypothetical protein
49-39673..44220 [+], 4548endopeptidase
50-44233..44439 [+], 207hypothetical protein
51-44445..44813 [+], 369hypothetical protein
52-44791..45186 [+], 396holin
53-45193..46662 [+], 1470cell wall hydrolase
54-46885..48126 [+], 1242recombinase
55-48089..49381 [+], 1293site-specific recombinaseIntegrase 
56-49461..51197 [+], 1737hypothetical protein
57-51839..52498 [-], 6605-amino-6-(5-phosphoribosylamino)uracil reductase
58-52989..53561 [-], 573putative transcriptional regulator
59-53837..54631 [-], 795aminoglycoside phosphotransferaseAR 
60-54724..55266 [-], 543streptothricin acetyltransferase
61-55263..56171 [-], 909putative aminoglycoside 6-adenylyltansferase
62-56476..57213 [-], 738rRNA (adenine-N(6)-) -methyltransferaseAR 
63-57387..57506 [-], 120hypothetical protein
64-57691..57858 [+], 168hypothetical protein
65-57935..58102 [+], 168hypothetical protein
66-58105..58923 [+], 819hypothetical protein
67-59120..60427 [+], 1308DNA-cytosine methyltransferase
68-60411..60839 [+], 429hypothetical protein
69-60850..61233 [+], 384hypothetical protein
70-61242..61475 [+], 234hypothetical protein
71-61478..62062 [+], 585hypothetical protein
72-62103..62627 [+], 525hypothetical protein
73-62627..64444 [+], 1818hypothetical proteinT4CP 
74-64462..64704 [+], 243hypothetical protein
75-64723..65577 [+], 855hypothetical protein
76-65639..65992 [+], 354hypothetical protein
77-65970..68300 [+], 2331TrsE-like proteinPrgJ, T4SS component 
78-68302..71103 [+], 2802hypothetical proteinPrgK, T4SS component 
79-71240..72250 [+], 1011hypothetical protein
80-72360..72647 [+], 288hypothetical proteinPrgK, T4SS component 
81-72733..73197 [-], 465abortive infection protein AbiGII
82-73241..74362 [+], 1122mobile element protein
83-74736..75185 [-], 450abortive infection protein AbiGII
84-75182..75772 [-], 591abortive infection protein AbiGI
85-75942..80837 [+], 4896agglutinin receptorPrgB, T4SS component 
86-80838..81029 [+], 192putative calcium-binding protein
87-81013..81564 [+], 552hypothetical protein
88-81637..87561 [+], 5925SNF2 family protein
89-87542..87916 [+], 375TnpV
90-88283..90202 [+], 1920tetracycline resistance protein TetOAR 
91-90253..91473 [+], 1221tetracycline resistance proteinAR 
92-91946..92581 [+], 636hypothetical protein
93-92676..93101 [+], 426hypothetical protein
94-93185..93658 [+], 474RNA polymerase ECF-type sigma factor
95-93811..94842 [+], 1032hypothetical protein
96-95062..95322 [-], 261hypothetical protein
97-96334..97188 [+], 855chromosome (plasmid) partitioning protein ParB
98-97265..97495 [+], 231bacterial seryl-tRNA synthetase related
99-97566..97757 [+], 192hypothetical protein
100-97811..99583 [+], 1773site-specific recombinase
101-99598..100509 [+], 912SNF2 family protein
102-100580..100879 [+], 300hypothetical protein
103-100893..101183 [+], 291hypothetical protein
104-101278..101916 [+], 639hypothetical protein
105-101956..103056 [+], 1101hypothetical protein
106-103084..103311 [+], 228hypothetical protein
107-103308..103697 [+], 390methyl-accepting chemotaxis protein
108-103747..104037 [+], 291hypothetical protein
109-104107..104583 [+], 477putative transcription regulator
110-104583..105350 [+], 768zeta toxin
111-105351..107894 [+], 2544hypothetical protein
112-108000..108122 [+], 123hypothetical protein
113-108232..108594 [+], 363hypothetical protein
114-108597..108962 [+], 366hypothetical protein
115-108949..110832 [+], 1884relaxaseRelaxase, MOBP Family
116-110929..111144 [+], 216hypothetical protein
117-111226..112302 [+], 1077epidermin leader peptide processing serine
118-112343..113041 [+], 699two-component response regulator
119-113022..114362 [+], 1341sensor-receptor histidine kinase NisK
120-114546..115247 [+], 702hypothetical protein
121-115240..115977 [+], 738arginine/ornithine antiporter ArcD
122-115955..116641 [+], 687hypothetical protein
123-117390..120362 [+], 2973lanthionine biosynthesis protein LanB
124-120343..122151 [+], 1809subtilin transport ATP-binding protein spaT
125-122144..123421 [+], 1278lanthionine biosynthesis cyclase LanC
126-123423..124139 [+], 717hypothetical protein
127-124407..124811 [+], 405hypothetical protein
128-125104..125262 [+], 159hypothetical protein
129-125316..127247 [+], 1932site-specific recombinase
130-127661..128773 [+], 1113UDP-galactopyranose mutase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins128Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PubMed:27774436]
 

Genomics & Bioinformatics Group in MML, SJTU