ICEberg
I. Information of ICE
ICEberg ID641
Name CMGETZ080501 This is a predicted ICE derived from literature
OrganismStreptococcus suis TZ080501
Size (bp)125,779
GC content [Genome] (%)39.05
Insertion siterum
FunctionAntibiotic resistance genes: aph(3')-III, sat4, sat4, erm(B), mef(A), msr(D), tet(O), tet(40)
Species that ICE can be transferred to-
Nucleotide SequenceKX077897 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1321..127099 
Putative oriT region -
Putative relaxase coordinates: 108956..110839;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CMGETZ080501 is not available.



The graph information of CMGETZ080501 components from KX077897
Complete gene list of CMGETZ080501 from KX077897
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-1..1356 [+], 135623S rRNA (uracil-5-)-methyltransferase RumA
2-1747..1917 [+], 171hypothetical protein
3-2304..3521 [+], 1218macrolide-efflux proteinAR 
4-3641..5104 [+], 1464ATPase component of ABC transporter
5-5222..5521 [-], 300hypothetical protein
6-5508..5876 [-], 369hypothetical protein
7-5873..7288 [-], 1416ImpB/MucB/SamB family protein
8-7293..7421 [-], 129hypothetical protein
9-7411..7638 [-], 228hypothetical protein
10-7641..8330 [-], 690pleiotropic regulator of exopolysaccharide
11-8606..10429 [+], 1824hypothetical protein
12-10763..11332 [+], 570hypothetical protein
13-11371..13326 [-], 1956DNA polymerase I
14-13375..13542 [-], 168hypothetical protein
15-13561..14109 [-], 549hypothetical protein
16-14114..15235 [-], 1122hypothetical protein
17-15228..15551 [-], 324hypothetical protein
18-15526..15660 [-], 135hypothetical protein
19-15950..18235 [+], 2286DNA primase/helicase
20-18520..18801 [+], 282hypothetical protein
21-18782..20158 [+], 1377DNA helicase
22-20151..20627 [+], 477hypothetical protein
23-20822..21004 [+], 183hypothetical protein
24-21049..22086 [+], 1038S-adenosylmethionine synthetase
25-22088..22453 [+], 366holin
26-22752..23213 [+], 462zinc-finger protein
27-23185..24438 [+], 1254adenine-specific methyltransferase
28-24438..25028 [+], 591homing endonuclease
29-25025..26299 [+], 1275DNA-cytosine methyltransferase
30-26345..26626 [+], 282hypothetical protein
31-26628..26840 [+], 213hypothetical protein
32-26842..27072 [+], 231hypothetical protein
33-27124..27597 [+], 474terminase small subunit
34-27594..29186 [+], 1593terminase large subunit
35-29246..29548 [+], 303plasmid stabilization system antitoxin protein
36-29548..29886 [+], 339death on curing protein
37-30023..30367 [+], 345hypothetical protein
38-30425..31708 [+], 1284portal protein
39-31701..32396 [+], 696protease-like protein
40-32415..33620 [+], 1206major capsid protein
41-33620..33880 [+], 261hypothetical protein
42-33880..34218 [+], 339hypothetical protein
43-34211..34579 [+], 369hypothetical protein
44-34601..34912 [+], 312hypothetical protein
45-34914..35483 [+], 570hypothetical protein
46-35494..35913 [+], 420hypothetical protein
47-35946..36077 [+], 132hypothetical protein
48-36096..38954 [+], 2859tail length tape-measure protein
49-38951..39673 [+], 723hypothetical protein
50-39675..44222 [+], 4548endopeptidase
51-44235..44441 [+], 207hypothetical protein
52-44447..44815 [+], 369hypothetical protein
53-44793..45188 [+], 396holin
54-45195..46664 [+], 1470cell wall hydrolase
55-46887..48128 [+], 1242recombinase
56-48091..49383 [+], 1293site-specific recombinaseIntegrase 
57-49465..51201 [+], 1737hypothetical protein
58-51843..52502 [-], 6605-amino-6-(5-phosphoribosylamino)uracil reductase
59-52993..53565 [-], 573putative transcriptional regulator
60-53841..54635 [-], 795aminoglycoside phosphotransferaseAR 
61-54728..55270 [-], 543streptothricin acetyltransferase
62-55267..56175 [-], 909putative aminoglycoside 6-adenylyltansferase
63-56480..57217 [-], 738rRNA (adenine-N(6)-) -methyltransferaseAR 
64-57391..57510 [-], 120hypothetical protein
65-57695..57862 [+], 168hypothetical protein
66-57939..58106 [+], 168hypothetical protein
67-58109..58927 [+], 819hypothetical protein
68-59076..60431 [+], 1356DNA-cytosine methyltransferase
69-60415..60843 [+], 429hypothetical protein
70-60854..61237 [+], 384hypothetical protein
71-61246..61479 [+], 234hypothetical protein
72-61482..62066 [+], 585hypothetical protein
73-62107..62631 [+], 525hypothetical protein
74-62631..64448 [+], 1818hypothetical proteinT4CP 
75-64466..64708 [+], 243hypothetical protein
76-64727..65581 [+], 855hypothetical protein
77-65643..65996 [+], 354hypothetical protein
78-65974..68304 [+], 2331TrsE-like proteinPrgJ, T4SS component 
79-68306..71107 [+], 2802hypothetical proteinPrgK, T4SS component 
80-71265..72254 [+], 990hypothetical protein
81-72386..72652 [+], 267hypothetical proteinPrgK, T4SS component 
82-72738..73202 [-], 465abortive infection protein AbiGII
83-73246..74367 [+], 1122mobile element protein
84-74741..75190 [-], 450abortive infection protein AbiGII
85-75187..75777 [-], 591abortive infection protein AbiGI
86-75947..80842 [+], 4896agglutinin receptorPrgB, T4SS component 
87-80843..81034 [+], 192putative calcium-binding protein
88-81018..81569 [+], 552hypothetical protein
89-81618..87566 [+], 5949SNF2 family protein
90-87797..87922 [+], 126TnpV
91-88289..90208 [+], 1920tetracycline resistance protein TetOAR 
92-90259..91479 [+], 1221tetracycline resistance proteinAR 
93-91952..92587 [+], 636hypothetical protein
94-92682..93107 [+], 426hypothetical protein
95-93191..93664 [+], 474RNA polymerase ECF-type sigma factor
96-93818..94849 [+], 1032hypothetical protein
97-96341..97195 [+], 855chromosome (plasmid) partitioning protein ParB
98-97272..97502 [+], 231bacterial seryl-tRNA synthetase related
99-97573..97764 [+], 192hypothetical protein
100-97818..99590 [+], 1773site-specific recombinase
101-99605..100516 [+], 912SNF2 family protein
102-100587..100886 [+], 300hypothetical protein
103-100900..101190 [+], 291hypothetical protein
104-101285..101923 [+], 639hypothetical protein
105-101963..103063 [+], 1101hypothetical protein
106-103091..103318 [+], 228hypothetical protein
107-103315..103704 [+], 390methyl-accepting chemotaxis protein
108-103754..104044 [+], 291hypothetical protein
109-104114..104590 [+], 477putative transcription regulator
110-104590..105357 [+], 768zeta toxin
111-105358..107901 [+], 2544hypothetical protein
112-108007..108129 [+], 123hypothetical protein
113-108239..108601 [+], 363hypothetical protein
114-108604..108969 [+], 366hypothetical protein
115-108956..110839 [+], 1884relaxaseRelaxase, MOBP Family
116-110936..111151 [+], 216hypothetical protein
117-111233..112309 [+], 1077epidermin leader peptide processing serine
118-112350..113048 [+], 699two-component response regulator
119-113026..114369 [+], 1344sensor-receptor histidine kinase NisK
120-114559..115260 [+], 702hypothetical protein
121-115253..115990 [+], 738arginine/ornithine antiporter ArcD
122-115968..116654 [+], 687hypothetical protein
123-117410..120385 [+], 2976lanthionine biosynthesis protein LanB
124-120366..122174 [+], 1809subtilin transport ATP-binding protein spaT
125-122167..123444 [+], 1278lanthionine biosynthesis cyclase LanC
126-123446..124162 [+], 717hypothetical protein
127-124430..124834 [+], 405hypothetical protein
128-125157..125285 [+], 129hypothetical protein
129-125339..127270 [+], 1932site-specific recombinase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins127Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PubMed:27774436]
 

Genomics & Bioinformatics Group in MML, SJTU