ICEberg
I. Information of ICE
ICEberg ID61
Name ICEHin86-28NP This is a putative ICE identified in this study by Blast
OrganismHaemophilus influenzae 86-028NP
Size (bp)56108
GC content [Genome] (%)38.71[38.16]
Insertion sitetRNA-Leu(NTHIT0004)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000057 (complete ICE sequence in this genome)
Replicon chromosome (1914490 bp, BioProject:11752) [NC_007146]
Genome coordinates92259..148366 
Putative oriT region -
Putative relaxase coordinates: 145547..147463; Locus tag: NTHI0163;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEHin86-28NP is not available.



The graph information of ICEHin86-28NP components from CP000057
Complete gene list of ICEHin86-28NP from CP000057
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1NTHI009587739..88527 [+], 789putative deoxyribonuclease
2NTHI009688589..88846 [+], 258hypothetical protein
3NTHI009788857..89132 [+], 276hypothetical protein
4trxA89182..89505 [-], 324thioredoxin
5ddh89625..90620 [-], 9962-hydroxyacid dehydrogenase homolog
6metB90633..91778 [-], 1146cystathionine gamma-synthase
7NTHI010192334..93170 [+], 837predicted ATPase involved in chromosome partitioning
8dnaB293172..94527 [+], 1356replicative DNA helicase
9NTHI010394520..96220 [+], 1701conserved hypothetical protein
10NTHI010496220..96771 [+], 552conserved hypothetical protein
11NTHI010696921..98144 [+], 1224conserved hypothetical protein
12NTHI010798441..99196 [+], 756conserved hypothetical protein
13NTHI010899196..99684 [+], 489conserved hypothetical protein
14ssb299930..100352 [+], 423Single-strand binding protein
15NTHI0110100379..100897 [+], 519conserved putative lipoprotein
16NTHI0111101113..101670 [-], 558conserved hypothetical protein
17topB2101746..103806 [+], 2061DNA topoisomerase III
18NTHI0113104691..105119 [+], 429conserved hypothetical protein
19NTHI0114105131..105223 [+], 93hypothetical protein
20NTHI0115105234..105875 [+], 642conserved hypothetical protein
21NTHI0116105910..106317 [+], 408hypothetical protein
22radC2106418..106888 [+], 471putative DNA repair radC-like protein
23NTHI0118106981..107577 [+], 597conserved hypothetical protein
24NTHI0119107635..108399 [+], 765conserved hypothetical proteinTfc1, T4SS component 
25pilL108498..109127 [+], 630conserved putative lipoproteinTfc2, T4SS component 
26NTHI0121109131..109871 [+], 741conserved putative exported proteinTfc3, T4SS component 
27NTHI0122109850..110608 [+], 759conserved putative exported proteinTfc4, T4SS component 
28NTHI0123110624..111130 [+], 507conserved putative exported proteinTfc5, T4SS component 
29NTHI0125111127..113376 [+], 2250conserved hypothetical proteinTfc6, T4SS component 
30NTHI0126113695..114381 [+], 687conserved putative membrane proteinTfc8, T4SS component 
31NTHI0127114512..114862 [+], 351conserved putative exported proteinTfc9, T4SS component 
32NTHI0128115131..115532 [+], 402conserved putative membrane proteinTfc10, T4SS component 
33NTHI0129115552..115923 [+], 372conserved putative membrane proteinTfc11, T4SS component 
34NTHI0130115935..116579 [+], 645conserved putative exported proteinTfc12, T4SS component 
35NTHI0131116579..117448 [+], 870conserved hypothetical proteinTfc13, T4SS component 
36NTHI0132117459..118859 [+], 1401conserved putative exported proteinTfc14, T4SS component 
37NTHI0133118869..119276 [+], 408conserved putative lipoproteinTfc15, T4SS component 
38NTHI0134119292..122162 [+], 2871conserved hypothetical proteinTfc16, T4SS component 
39NTHI0135122170..122577 [+], 408conserved hypothetical proteinTfc17, T4SS component 
40NTHI0136122587..122910 [+], 324conserved hypothetical membrane proteinTfc18, T4SS component 
41NTHI0137122919..124412 [+], 1494conserved putative membrane proteinTfc19, T4SS component 
42NTHI0139124468..124797 [-], 330conserved hypothetical membrane proteinTfc20, T4SS component 
43tnpA124955..127960 [-], 3006transposon Tn3 transposase
44NTHI0140126925..127041 [+], 117hypothetical protein
45tnpR128088..128681 [+], 594transposon Tn3 resolvase
46NTHI2055128729..129589 [+], 861beta-lactamase TEM precursor
47NTHI0143129813..129992 [+], 180hypothetical protein
48NTHI0144130037..130444 [-], 408hypothetical exported proteinTfc21, T4SS component 
49NTHI0145130460..132460 [-], 2001conserved putative exported proteinTfc22, T4SS component 
50NTHI0146132475..133416 [-], 942conserved putative exported proteinTfc23, T4SS component 
51NTHI0147133413..133856 [-], 444conserved hypothetical proteinTfc24, T4SS component 
52NTHI0148134168..134587 [+], 420conserved hypothetical membrane protein
53NTHI0149134672..134905 [+], 234conserved hypothetical protein
54NTHI0150134908..135156 [+], 249hypothetical protein
55NTHI0151135160..135318 [+], 159hypothetical protein
56traC135449..136402 [+], 954conserved putative antirestriction protein
57NTHI0153136506..137267 [+], 762possible type I restriction enzyme M subunit
58NTHI0154137493..138059 [+], 567hypothetical protein
59NTHI0155138099..138473 [+], 375conserved hypothetical protein
60NTHI0156138463..139140 [+], 678conserved hypothetical protein
61NTHI0157139118..139735 [+], 618conserved hypothetical protein
62NTHI0158139999..140598 [-], 600resolvase/integrase-like protein
63NTHI0159140613..140804 [-], 192hypothetical protein
64NTHI0160141273..141527 [-], 255hypothetical protein
65NTHI0161142718..143431 [+], 714conserved hypothetical protein
66NTHI0162144151..145404 [+], 1254hypothetical protein
67NTHI0163145547..147463 [+], 1917conserved hypothetical proteinRelaxase, MOBH Family
68NTHI0164147524..148366 [+], 843putative site-specific recombinaseIntegrase 
69thrC149016..150293 [-], 1278threonine synthase
70thrB150336..151280 [-], 945homoserine kinase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins62Fasta
(1) Juhas M; Power PM; Harding RM; Ferguson DJ; Dimopoulou ID; Elamin AR; Mohd-Zain Z; Hood DW; Adegbola R; Erwin A; Smith A; Munson RS; Harrison A; Mansfield L; Bentley S; Crook DW (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PubMed:17996041] in_silico
(2) Harrison A; Dyer DW; Gillaspy A; Ray WC; Mungur R; Carson MB; Zhong H; Gipson J; Gipson M; Johnson LS; Lewis L; Bakaletz LO; Munson RS Jr (2005). Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. J Bacteriol. 187(13):4627-36. [PubMed:15968074]
(3) Identified as part of this study from CP000057
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU