 ICEberg ID | 57 |
Name  | ICEclc(JS705)  |
| ICEO ID | ICEO_0000702 |
| Organism | Ralstonia sp. JS705 |
| Size (bp) | - |
| GC content [Genome] (%) | - |
| Insertion site | tRNA-Gly |
| Function | Chlorobenzene degradative pathway |
| Species that ICE can be transferred to | Pseudomonas putida; Pseudomonas aeruginosa; Cupriavidus necator |
| Nucleotide Sequence | AJ006307 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICEclc(JS705) components from AJ006307 | |||||
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| Incomplete gene list of ICEclc(JS705) from AJ006307 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | clcR | 687..1571 [-], 885 | ClcR | ||
| 2 | clcA | 1741..2523 [+], 783 | chlorocatechol 1,2-dioxygenase | ||
| 3 | mcbF | 3036..3866 [+], 831 | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase | ||
| 4 | mcbAa | 3960..5315 [+], 1356 | terminal oxygenase large subunit | ||
| 5 | mcbAb | 5426..5989 [+], 564 | terminal oxygenase small subunit | ||
| 6 | mcbAc | 6000..6323 [+], 324 | ferredoxin | ||
| 7 | mcbAd | 6323..7555 [+], 1233 | reductase | ||
| 8 | mcbB | 7552..8379 [+], 828 | cis-chlorobenzene dihydrodiol dehydrogenase | ||
| 9 | tnpA | 8574..9818 [+], 1245 | transposase | ||
| 10 | clcR | 12271..12483 [-], 213 | transcriptional activator | ||
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(1) Sentchilo V; Czechowska K; Pradervand N; Minoia M; Miyazaki R; van der Meer JR (2009). Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol. 72(5):1293-306. [PubMed:19432799]
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(2) Muller TA; Werlen C; Spain J; Van Der Meer JR (2003). Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ Microbiol. 5(3):163-73. [PubMed:12588296]
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| experimental literature |