ICEberg
I. Information of ICE
ICEberg ID49
Name ICECmeCH34-1 This is a putative ICE identified in this study by Blast
OrganismCupriavidus metallidurans CH34
Size (bp)109581
GC content [Genome] (%)64.67[63.82]
Insertion sitetRNA-Gly(Rmet_R0039)
FunctionMercuric resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000352 (complete ICE sequence in this genome)
Replicon chromosome 1 (3928089 bp, BioProject:250) [NC_007973]
Genome coordinates2508632..2618212 
Putative oriT region -
Putative relaxase coordinates: 2575344..2577386; Locus tag: Rmet_2364;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICECmeCH34-1 is not available.



The graph information of ICECmeCH34-1 components from CP000352
Complete gene list of ICECmeCH34-1 from CP000352
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Rmet_65182503879..2504091 [-], 213hypothetical protein
2Rmet_22822504104..2504430 [-], 327conserved hypothetical protein (secreted)
3Rmet_22832504698..2505786 [-], 1089conserved hypothetical protein; putative membrane protein
4yeiE2505889..2506806 [+], 918putative DNA-binding transcriptional regulator
5Rmet_22852506827..2508053 [-], 1227monovalent cation:proton antiporter (CPA2 family)
6Rmet_22872509038..2509493 [-], 456conserved hypothetical protein; putative membrane protein
7Rmet_22882509989..2510735 [+], 747conserved hypothetical protein
8alpA2510854..2511066 [+], 213DNA-binding transcriptional activator
9soj2511109..2511984 [+], 876ATPase involved in plasmid partitioning Soj
10Rmet_22912511968..2512237 [+], 270conserved hypothetical protein
11Rmet_22922512230..2513909 [+], 1680putative regulator
12Rmet_22932513924..2514484 [+], 561putative regulator
13Rmet_22942514488..2515726 [+], 1239conserved hypothetical protein
14Rmet_22952516156..2516947 [+], 792conserved hypothetical protein
15inrR2516944..2517471 [+], 528Integrase regulator R
16ssb22517545..2517985 [+], 441single-stranded DNA binding protein
17topB22518269..2520299 [+], 2031DNA topoisomerase III
18Rmet_22992521023..2521658 [-], 636Cation efflux system protein
19Rmet_65192521865..2522035 [-], 171hypothetical protein
20Rmet_23002521983..2522282 [-], 300hypothetical protein
21Rmet_65202522043..2522279 [+], 237conserved hypothetical protein
22Rmet_23012522292..2522666 [+], 375hypothetical protein
23pbrR22522734..2523132 [-], 399transcriptional regulator, MerR-family
24cadA2523182..2526136 [+], 2955lead/cadmium-transporting ATPase (cation efflux ATPase)
25pbrC22526140..2526640 [+], 501prolipoprotein signal peptidase (signal peptidase II)
26Rmet_23052526977..2527288 [+], 312conserved hypothetical protein
27Rmet_23062527425..2527838 [+], 414conserved hypothetical protein
28Rmet_23072527860..2528252 [+], 393conserved hypothetical protein
29Rmet_23082528435..2529121 [+], 687conserved hypothetical protein
30Rmet_23092529205..2529942 [+], 738conserved hypothetical protein
31Rmet_23102530040..2530318 [+], 279conserved hypothetical protein
32Rmet_23112530607..2531431 [+], 825conserved hypothetical protein (protein belongs to CMGI-1)
33merR2531693..2532100 [-], 408Mercuric resistance operon regulatory protein
34merT2532172..2532522 [+], 351Mercuric transport protein (Mercury ion transport protein)
35merP2532535..2532822 [+], 288Mercuric transport protein periplasmic component precursor (Periplasmic mercury ion-binding protein) (Mercury scavenger protein)
36merA'2532833..2533951 [+], 1119-
37merA''2533662..2534519 [+], 858mercuric reductase
38tnpA2534538..2535053 [+], 516-
39Rmet_23172534894..2535535 [+], 642-
40Rmet_23182535605..2535865 [+], 261conserved hypothetical protein
41Rmet_23192536173..2536457 [+], 285conserved hypothetical protein
42Rmet_23202536675..2537673 [+], 999conserved hypothetical protein
43yubP2537819..2538646 [+], 828conserved hypothetical protein
44Rmet_23222538741..2539430 [+], 690conserved hypothetical protein
45cggAII2539525..2539866 [+], 342Conserved plasmid protein
46Rmet_23242539971..2540378 [+], 408conserved hypothetical protein
47Rmet_23252540395..2540655 [+], 261conserved hypothetical protein
48Rmet_23262540732..2541379 [+], 648conserved hypothetical protein
49Rmet_23272541444..2542553 [+], 1110putative adenine-specific DNA methyltransferase
50Rmet_23282542604..2542924 [+], 321conserved hypothetical protein
51Rmet_23292543014..2543319 [+], 306conserved hypothetical protein
52Rmet_23302543456..2545735 [+], 2280Putative plasmid-related DNA/RNA helicase
53pilL2545874..2546473 [+], 600pilL lipoprotein (type IV pili)Tfc2, T4SS component 
54Rmet_23322546470..2547114 [+], 645conserved putative exported proteinTfc2, T4SS component 
55Rmet_23332547127..2547864 [+], 738conserved putative exported proteinTfc3, T4SS component 
56Rmet_23342547846..2548436 [+], 591putative lytic transglycosylase, catalyticTfc4, T4SS component 
57Rmet_23352548433..2548981 [+], 549putative exported proteinTfc5, T4SS component 
58virD42548986..2551175 [+], 2190VirD4, Type IV secretory pathway, VirD4 componentsTfc6, T4SS component 
59Rmet_23372551172..2551921 [+], 750conserved hypothetical protein; putative membrane proteinTfc8, T4SS component 
60Rmet_23382551962..2554586 [-], 2625conserved hypothetical protein
61Rmet_23392554596..2555321 [-], 726conserved hypothetical protein
62Rmet_23402555360..2556262 [-], 903conserved hypothetical protein
63Rmet_23412556262..2556915 [-], 654conserved hypothetical protein
64Rmet_65232556759..2557229 [-], 471conserved hypothetical protein
65Rmet_23422557226..2558140 [-], 915putative AAA ATPase, central region
66Rmet_23432558158..2558733 [-], 576conserved hypothetical protein
67Rmet_23442558730..2559200 [-], 471putative excisionase
68Rmet_23452559404..2559787 [+], 384conserved hypothetical proteinTfc9, T4SS component 
69Rmet_23462559784..2560017 [+], 234conserved hypothetical protein
70Rmet_23472560034..2560393 [+], 360conserved hypothetical proteinTfc10, T4SS component 
71Rmet_23482560406..2560804 [+], 399conserved hypothetical proteinTfc11, T4SS component 
72Rmet_23492560801..2561493 [+], 693conserved hypothetical proteinTfc12, T4SS component 
73Rmet_23502561490..2562401 [+], 912conserved hypothetical proteinTfc13, T4SS component 
74Rmet_23512562391..2563809 [+], 1419conserved hypothetical proteinTfc14, T4SS component 
75Rmet_23522563790..2564230 [+], 441Putative secreted proteinTfc15, T4SS component 
76Rmet_23532564230..2567121 [+], 2892Type IV secretory pathway, VirB4 componentsTfc16, T4SS component 
77Rmet_23542567146..2567910 [+], 765putative exported protein
78radC2568086..2568580 [+], 495DNA binding protein, possibly associated to lesions
79Rmet_23562568745..2569191 [+], 447conserved hypothetical protein; putative exported proteinTfc24, T4SS component 
80Rmet_23572569188..2570138 [+], 951putative exported proteinTfc23, T4SS component 
81Rmet_23582570148..2571542 [+], 1395putative membrane proteinTfc22, T4SS component 
82Rmet_23592571539..2571895 [+], 357putative membrane protein
83Rmet_23602571911..2573458 [+], 1548conserved hypothetical protein (membrane)Tfc19, T4SS component 
84Rmet_23612573474..2573833 [-], 360conserved hypothetical protein
85Rmet_23622573907..2574539 [-], 633conserved hypothetical protein
86Rmet_23632574552..2575178 [-], 627conserved hypothetical protein
87Rmet_23642575344..2577386 [+], 2043relaxaseRelaxase, MOBH Family
88Rmet_23652577434..2578429 [-], 996putative transcriptional regulator
89Rmet_23662578766..2579635 [+], 870putative enoyl-CoA hydratase/isomerase
90Rmet_23672579695..2580120 [-], 426conserved hypothetical protein
91Rmet_23682580177..2580554 [-], 378Alkylhydroperoxidase AhpD core
92Rmet_23692580631..2581857 [-], 1227Major facilitator superfamily MFS_1
93ygaV2582007..2582318 [+], 312DNA-binding transcriptional regulator
94Rmet_23712582341..2582868 [+], 528Putative detoxifying sulphurtransferase ; inner membrane protein
95Rmet_23722582975..2583934 [+], 960putative hydroxyacylglutathione hydrolase
96Rmet_23732583983..2585653 [+], 1671conserved hypothetical protein
97Rmet_23742585700..2586179 [+], 480hypothetical protein
98ccoN2586172..2587728 [+], 1557cytochrome-c oxidase
99ccoO2587785..2588366 [+], 582Cytochrome C oxidase, mono-heme subunit
100Rmet_23772588507..2589181 [+], 675putative cytochrome c4
101Rmet_23782589414..2590262 [+], 849Putative cytochrome c (fragment)
102ctpA12590243..2592501 [+], 2259metal transporter ATPase
103cutE2592526..2594124 [+], 1599Apolipoprotein N-acyltransferase
104armS (delta)2594278..2594646 [-], 369-
105tnpA2594664..2595692 [+], 1029transposase IS1088
106armS (delta)2595681..2596769 [-], 1089-
107armR2596766..2597434 [-], 669ArmR, DNA-binding response regulator (QseB)
108ccmA2597603..2598226 [+], 624heme exporter subunit ; ATP-binding component of ABC superfamily
109ccmB2598223..2598909 [+], 687heme exporter subunit; membrane component of ABC superfamily, cytochrome c maturation protein B
110ccmC2598922..2599659 [+], 738heme exporter subunit; membrane component of ABC superfamily; protein C
111ccmD2599656..2599847 [+], 192putative heme exporter protein D,cytochrome c-type biogenesis protein
112ccmE2599831..2600277 [+], 447periplasmic heme chaperone
113ccmF2600281..2602242 [+], 1962heme lyase, CcmF subunit
114ccmG2602239..2602763 [+], 525periplasmic thioredoxin of cytochrome c-type biogenesis
115cycL2602760..2603215 [+], 456Cytochrome c-type biogenesis protein cycL precursor
116cycH2603212..2604093 [+], 882putative cytochrome c-type biogenesis protein CycH
117dsbD2604191..2606029 [+], 1839Thiol:disulfide interchange protein
118dsbE2606029..2606865 [+], 837putative thiol:disulfide interchange protein
119dsbG2606868..2607641 [+], 774Putative thiol:disulfide interchange protein
120Rmet_23972607732..2608538 [+], 807putative membrane protein
121Rmet_23982608581..2609957 [+], 1377putative pyridine nucleotide-disulfide oxidoreductase, class I
122Rmet_23992609989..2610312 [+], 324conserved hypothetical protein
123traR22610350..2611240 [+], 891transcriptional regulator
124Rmet_24012611262..2611555 [-], 294Putative HTH-type transcriptional regulator yazB (modular protein)
125traR2611675..2612331 [+], 657transcriptional regulator
126int2612531..2613865 [-], 1335-
127tnmB2613969..2614538 [+], 570protein involved in mobility of Tn6049
128tnmA2614650..2616089 [+], 1440transposase Tn6049Integrase 
129gspA2616086..2616919 [+], 834ATPase (type II general secretion pathway) Tn6049
130tnmC2616973..2617188 [+], 216conserved hypothetical protein Tn6049
131int2617367..2617987 [-], 621-
132pgsA2618628..2619227 [-], 600phosphatidylglycerophosphate synthetase
133uvrC2619361..2621382 [-], 2022excinuclease UvrABC, endonuclease subunit C
134Rmet_24112621495..2622646 [+], 1152conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins119Fasta
Identified as part of this study from CP000352

Genomics & Bioinformatics Group in MML, SJTU