ICEberg
I. Information of ICE
ICEberg ID48
Name ICEBxeLB400-1 This is a putative ICE identified in this study by Blast
OrganismBurkholderia xenovorans LB400
Size (bp)122833
GC content [Genome] (%)61.71[62.76]
Insertion sitetRNA-Gly(Bxe_AR0057)
FunctionDrug resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000270 (complete ICE sequence in this genome)
Replicon chromosome 1 (4895836 bp, BioProject:254) [NC_007951]
Genome coordinates3559420..3682252 
Putative oriT region -
Putative relaxase coordinates: 3612030..3613877; Locus tag: Bxe_A1173;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEBxeLB400-1 is not available.



The graph information of ICEBxeLB400-1 components from CP000270
Complete gene list of ICEBxeLB400-1 from CP000270
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Bxe_A12353555320..3556054 [-], 735hypothetical protein
2Bxe_A12343556532..3557410 [-], 879hypothetical protein
3Bxe_A12333557414..3558730 [-], 1317hypothetical protein
4Bxe_A12323560225..3560980 [+], 756Conserved hypothetical protein
5Bxe_A12313561100..3561312 [+], 213phage transcriptional regulator, AlpA
6Bxe_A12303561356..3562231 [+], 876Putative chromosome partitioning protein ParA
7Bxe_A12293562465..3564117 [+], 1653Conserved hypothetical protein
8Bxe_A12283564133..3564693 [+], 561Conserved hypothetical protein
9Bxe_A12273564697..3565941 [+], 1245Conserved hypothetical protein
10Bxe_A12263566272..3567051 [+], 780Conserved hypothetical protein
11Bxe_A12253567048..3567575 [+], 528Putative integrase regulator R protein
12Bxe_A12243567649..3568089 [+], 441Putative single-stranded DNA binding protein
13Bxe_A12233568368..3570380 [+], 2013DNA topoisomerase III
14Bxe_A12223570917..3572518 [+], 1602C-5 cytosine-specific DNA methylase
15Bxe_A12213572763..3573320 [+], 558Conserved hypothetical protein
16Bxe_A12203573477..3573863 [+], 387Conserved hypothetical protein
17Bxe_A12193573885..3574277 [+], 393Conserved hypothetical protein
18Bxe_A12183574450..3575136 [+], 687Conserved hypothetical protein
19Bxe_A12173575216..3575953 [+], 738hypothetical protein
20Bxe_A12163576051..3576329 [+], 279hypothetical protein
21Bxe_A12153576616..3577428 [+], 813hypothetical protein
22Bxe_A12143577572..3577925 [+], 354Conserved hypothetical protein
23Bxe_A12133578070..3578324 [+], 255hypothetical protein
24Bxe_A12123578373..3579740 [+], 1368RNA-directed DNA polymerase (Reverse transcriptase)
25Bxe_A12113579925..3580767 [+], 843Putative phage-related protein
26Bxe_A12103581086..3581469 [-], 384hypothetical protein
27Bxe_A12093581545..3582462 [+], 918Conserved hypothetical protein
28Bxe_A12083582520..3583209 [+], 690Conserved hypothetical protein
29Bxe_A12073583305..3583637 [+], 333Conserved hypothetical, plasmid-related protein
30Bxe_A12063583734..3584141 [+], 408Conserved hypothetical protein
31Bxe_A12053584158..3584418 [+], 261Conserved hypothetical protein
32Bxe_A12043584495..3585145 [+], 651Conserved hypothetical protein
33Bxe_A12033585210..3586319 [+], 1110Conserved hypothetical, plasmid-related protein
34Bxe_A12023586392..3588698 [+], 2307Putative, plasmid-related, DNA/RNA helicase
35Bxe_A12013588812..3589681 [+], 870hypothetical protein
36Bxe_A12003589842..3590441 [+], 600Conserved hypothetical proteinTfc2, T4SS component 
37Bxe_A11993590438..3591088 [+], 651hypothetical proteinTfc2, T4SS component 
38Bxe_A11983591103..3591822 [+], 720Conserved hypothetical proteinTfc3, T4SS component 
39Bxe_A11973591804..3592394 [+], 591Conserved hypothetical proteinTfc4, T4SS component 
40Bxe_A11963592391..3592939 [+], 549Conserved hypothetical proteinTfc5, T4SS component 
41Bxe_A11953592944..3595130 [+], 2187hypothetical proteinTfc6, T4SS component 
42Bxe_A11943595127..3595876 [+], 750Conserved hypothetical proteinTfc8, T4SS component 
43Bxe_A11933595913..3596317 [-], 405hypothetical protein
44Bxe_A11923596503..3596886 [+], 384Plasmid conserved hypothetical protein, RAQPRDTfc9, T4SS component 
45Bxe_A11913596883..3597116 [+], 234hypothetical protein
46Bxe_A11903597127..3597492 [+], 366Conserved hypothetical proteinTfc10, T4SS component 
47Bxe_A11893597505..3597915 [+], 411Conserved hypothetical proteinTfc11, T4SS component 
48Bxe_A11883597912..3598604 [+], 693Conserved hypothetical proteinTfc12, T4SS component 
49Bxe_A11873598601..3599533 [+], 933Conserved hypothetical proteinTfc13, T4SS component 
50Bxe_A11863599523..3600941 [+], 1419Conserved hypothetical proteinTfc14, T4SS component 
51Bxe_A11853600922..3601362 [+], 441Conserved hypothetical proteinTfc15, T4SS component 
52Bxe_A11843601362..3604229 [+], 2868Conserved hypothetical proteinTfc16, T4SS component 
53Bxe_A11833604243..3605007 [+], 765Conserved hypothetical protein
54Bxe_A11823605191..3605685 [+], 495DNA repair protein RadC
55Bxe_A11813605844..3606290 [+], 447Conserved hypothetical proteinTfc24, T4SS component 
56Bxe_A11803606287..3607234 [+], 948Conserved hypothetical proteinTfc23, T4SS component 
57Bxe_A11793607244..3608641 [+], 1398Conserved hypothetical proteinTfc22, T4SS component 
58Bxe_A11783608638..3608997 [+], 360hypothetical protein
59Bxe_A11773609013..3610530 [+], 1518Conserved hypothetical proteinTfc19, T4SS component 
60Bxe_A11763610544..3610921 [-], 378hypothetical protein
61Bxe_A11753610949..3611407 [-], 459Conserved hypothetical protein
62Bxe_A11743611407..3611793 [-], 387transcriptional regulator, AbrB family
63Bxe_A11733612030..3613877 [+], 1848Conserved hypothetical proteinRelaxase, MOBH Family
64Bxe_A11713614392..3615198 [-], 807transcriptional regulator, AraC family
65Bxe_A11703615261..3616487 [+], 1227major facilitator family (MFS) transporter
66Bxe_A11653617981..3618898 [-], 918transcriptional regulator, AraC family
67Bxe_A11643619150..3620730 [+], 1581Putative AMP-dependent, long-chain-fatty-acid- CoA ligase
68Bxe_A11633620732..3622144 [+], 1413Putative long-chain-fatty-acid--CoA ligase
69Bxe_A11623622200..3623195 [+], 996Nitrilase (NitA)
70Bxe_A11613623223..3624257 [+], 1035hypothetical protein
71Bxe_A11603624752..3625954 [-], 1203Putative esterase of the alpha-beta hydrolase superfamily
72Bxe_A11593625984..3626646 [-], 663hypothetical protein
73Bxe_A11583626672..3626974 [-], 303Conserved hypothetical protein
74Bxe_A11573627006..3628040 [-], 1035MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily
75Bxe_A11563628048..3629622 [-], 1575major facilitator superfamily (MFS) multidrug efflux pump
76Bxe_A11553629619..3631154 [-], 1536MFS efflux system, outer membrane porin
77Bxe_A11543631331..3631729 [-], 399hypothetical protein
78Bxe_A11533631772..3632398 [-], 627Putative esterase
79amnG3632776..3633813 [-], 10384-hydroxy 2-oxovalerate aldolase
80amnH3633829..3634770 [-], 942acetaldehyde dehydrogenase
81amnE3634831..3635595 [-], 7654-oxalocrotonate decarboxylase
82amnF3635592..3636401 [-], 8102-keto-4-pentenoate hydratase
83amnD3636416..3636853 [-], 4382-aminomuconate deaminase
84amnC3636858..3638336 [-], 14792-hydroxymuconate semialdehyde dehydrogenase
85amnA3638396..3639208 [-], 8132-aminophenol 1,6-dioxygenase, alpha subunit
86amnB3639253..3640167 [-], 9152-aminophenol 1,6-dioxygenase, beta subunit
87Bxe_A11443640179..3640592 [-], 414Putative endoribonuclease, translationalinhibitor protein
88Bxe_A11433640688..3641305 [+], 618transcriptional regulator, MarR family
89Bxe_A11423641444..3642196 [+], 753Conserved hypothetical protein
90Bxe_A11413642218..3642877 [+], 660transcriptional regulator, TetR family
91Bxe_A11403642990..3643409 [+], 420Conserved hypothetical protein
92Bxe_A11393643600..3644499 [+], 900Conserved hypothetical protein
93Bxe_A11383644930..3645616 [+], 687transcriptional regulator, TetR family
94Bxe_A11373645613..3646137 [+], 525transcriptional regulator, MarR family
95Bxe_A11363646159..3647070 [+], 912transcriptional regulator, LysR family
96Bxe_A11353647096..3647395 [-], 300transcriptional regulator, XRE family
97Bxe_A11343647517..3648158 [+], 642transcriptional regulator, LysR family
98clcR3649227..3650111 [-], 885transcriptional regulator, LysR family
99clcA3650281..3651063 [+], 7833-chlorocatechol 1,2-dioxygenase
100clcB3651060..3652172 [+], 1113muconate cycloisomerase
101Bxe_A11283652199..3653185 [+], 987putative tricarboxylate transporter, periplasmic ligand binding protein (TctC subunit)
102clcD3653207..3653917 [+], 711Dienelactone hydrolase
103clcE3653914..3654972 [+], 1059maleylacetate reductase
104Bxe_A11253655088..3656071 [+], 984transcriptional regulator, AraC family
105Bxe_A11243656722..3658011 [-], 1290Transposase, TnpA
106Bxe_A11233658217..3658795 [+], 579hypothetical protein
107Bxe_A11223658894..3660330 [+], 1437Putative transposase protein
108Bxe_A11213660327..3661184 [+], 858Putative general secretion pathway protein, ATPase
109Bxe_A11203661186..3661401 [+], 216hypothetical protein
110Bxe_A11193661451..3661972 [-], 522signal peptidase II, Aspartic peptidase, MEROPS family A08
111Bxe_A11183661976..3662872 [-], 897heavy metal efflux pump, CDF family
112Bxe_A11173662968..3663375 [+], 408transcriptional regulator, MerR family
113Bxe_A11163663667..3664659 [+], 993Putative ABC transporter, periplasmic ligand binding protein
114Bxe_A11153664896..3665798 [+], 903Putative dehydrogenase/oxidoreductase protein
115Bxe_A11143665813..3666127 [+], 315Conserved hypothetical protein
116Bxe_A11133666140..3667069 [+], 930Putative dioxygenase
117Bxe_A11123667071..3667451 [+], 381Conserved hypothetical protein
118Bxe_A11113667464..3668408 [+], 945Putative fumarylacetoacetate (FAA) hydrolase
119Bxe_A11103668440..3668844 [+], 405amino acid/amide ABC transporter substrate-binding protein, HAAT family
120ohbR3668806..3669132 [-], 327transcriptional regulator, IclR family
121ohbA3669452..3669982 [+], 531Ortho-halobenzoate-1,2-dioxygenase, beta subunit
122ohbB3670023..3671309 [+], 1287Ortho-halobenzoate 1,2-dioxygenase, alpha subunit
123Bxe_A11063671546..3672835 [-], 1290Transposase, TnpA
124Bxe_A11053672857..3673369 [-], 513signal peptidase II, Aspartic peptidase, MEROPS family A08
125Bxe_A11043673373..3674269 [-], 897heavy metal efflux pump, CDF family
126Bxe_A11033674365..3674772 [+], 408transcriptional regulator, MerR family
127Bxe_A11023675071..3676333 [+], 1263ring hydroxylating dioxygenase, alpha subunit
128Bxe_A11013676336..3676815 [+], 480Aromatic-ring-hydroxylating dioxygenase, beta subunit
129Bxe_A11003676913..3677890 [+], 978Vanillate O-demethylase reductase subunit, VanB
130Bxe_A10993678095..3679480 [+], 1386Major facilitator superfamily, aromatic acid/H+ symporter
131Bxe_A10983679542..3679886 [+], 345Conserved hypothetical protein
132Bxe_A10973680095..3682026 [-], 1932Putative phage integraseIntegrase 
133Bxe_A10963682541..3683167 [-], 627CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
134Bxe_A10953683290..3685551 [-], 2262Excinuclease ABC subunit C
135Bxe_A10943685757..3686950 [+], 1194Conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins129Fasta
Identified as part of this study from CP000270

Genomics & Bioinformatics Group in MML, SJTU