ICEberg
I. Information of ICE
ICEberg ID467
Name HAI2 This is a predicted ICE derived from literature
OrganismErwinia carotovora subsp. atroseptica SCRI1043
Size (bp)97876
GC content [Genome] (%)48.29
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceBX950851 (complete ICE sequence in this genome)
Replicon chromosome (5064019 bp, BioProject:350) [NC_004547]
Genome coordinates590755..688630 
Putative oriT region -
Putative relaxase coordinates: 685696..687294; Locus tag: ECA0613;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of HAI2 is not available.



The graph information of HAI2 components from BX950851
Complete gene list of HAI2 from BX950851
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1ECA0510587151..587651 [+], 501putative capsular polysacharide biosynthesis transferase
2ccdA1588090..588308 [-], 219putative toxin addiction system protein
3ECA0512588326..588568 [-], 243conserved hypothetical protein
4ECA0513588670..588912 [+], 243putative phage transcriptional regulator
5ECA0514589060..589218 [+], 159putative membrane protein
6ECA0515589365..590507 [+], 1143conserved hypothetical protein
7ECA0516590844..591731 [+], 888conserved hypothetical protein
8ECA0517591724..592413 [+], 690putative membrane protein
9ECA0518592410..592802 [+], 393hypothetical protein
10ECA0519592768..594162 [+], 1395replicative DNA helicase
11ECA0520594162..595886 [+], 1725conserved hypothetical protein
12ECA0521595890..596162 [+], 273hypothetical protein
13ECA0522596187..596801 [+], 615conserved hypothetical protein
14ECA0522A596810..597064 [+], 255hypothetical protein
15ECA0523597237..598433 [+], 1197conserved hypothetical protein
16ECA0524598803..599600 [+], 798conserved hypothetical protein
17topB599597..601615 [+], 2019putative DNA topoisomerase
18ECA0526601919..602095 [-], 177putative phage protein
19ECA0527602138..602293 [-], 156hypothetical protein
20ECA0528602464..602955 [+], 492conserved hypothetical protein
21ECA0531603654..604091 [+], 438putative plasmid-related protein
22pilL604237..605553 [+], 1317putative Type IV pilus proteinTfc2, T4SS component 
23pilM605553..605999 [+], 447putative Type IV pilus protein
24pilN606013..607677 [+], 1665putative Type IV pilus protein
25pilP608990..609487 [+], 498putative Type IV pilus protein
26pilQ609487..611046 [+], 1560putative Type IV pilus nucleotide-binding protein
27ECA0539611015..611167 [+], 153hypothetical protein
28pilR611178..612215 [+], 1038putative Type IV pilus protein
29pilS612271..612876 [+], 606putative type IV pilus prepilin
30pilT612883..613401 [+], 519putative Type IV pilus proteinOrf169_F, T4SS component 
31pilU613398..614057 [+], 660putative prepilin peptidase
32pilV614071..615465 [+], 1395putative Type IV pilus prepilin protein
33ECA0545615469..615948 [+], 480alternative C-terminus for the PilV protein (fragment)
34ECA0545A615967..616182 [-], 216alternative C-terminus for the PilV protein (fragment)
35rci616235..617362 [+], 1128shufflon-specific DNA recombinaseIntegrase 
36ECA0547617411..617902 [+], 492conserved hypothetical protein
37traE618090..618890 [+], 801putative plasmid transfer protein
38traF619034..620236 [+], 1203putative plasmid transfer protein
39ECA0550620303..620752 [+], 450putative plasmid protein protein
40ECA0551620819..621118 [+], 300putative membrane protein
41ECA0552621156..621848 [+], 693conserved hypothetical protein
42ECA0553621946..622320 [+], 375putative exported protein
43ECA0554622423..623298 [+], 876putative membrane proteinTfc2, T4SS component 
44ECA0555623308..624021 [+], 714putative exported proteinTfc3, T4SS component 
45ECA0556624021..624608 [+], 588putative exported proteinTfc4, T4SS component 
46ECA0557624609..625130 [+], 522putative exported proteinTfc5, T4SS component 
47ECA0558625127..625744 [+], 618putative membrane protein
48ECA0559625722..626204 [+], 483putative membrane protein
49ECA0560626208..628304 [+], 2097putative plasmid transfer proteinTfc6, T4SS component 
50ECA0561628306..629061 [+], 756putative membrane proteinTfc8, T4SS component 
51ECA0562629084..629278 [+], 195hypothetical protein
52ECA0563629420..629959 [-], 540putative membrane protein
53ECA0564630094..630414 [+], 321putative exported proteinTfc9, T4SS component 
54ECA0565630416..630655 [+], 240putative membrane protein
55ECA0566630682..631023 [+], 342putative membrane proteinTfc10, T4SS component 
56ECA0567631033..631395 [+], 363putative membrane proteinTfc11, T4SS component 
57ECA0568631392..632048 [+], 657putative membrane proteinTfc12, T4SS component 
58ECA0569632045..632971 [+], 927putative exported proteinTfc13, T4SS component 
59ECA0570632961..634493 [+], 1533putative exported proteinTfc14, T4SS component 
60ECA0571634611..634946 [+], 336hypothetical protein
61ECA0572634939..635349 [+], 411putative lipoproteinTfc15, T4SS component 
62ECA0573635349..638210 [+], 2862putative plasmid-related proteinTfc16, T4SS component 
63ECA0574638207..638653 [+], 447conserved hypothetical proteinTfc17, T4SS component 
64ECA0575638755..639189 [-], 435putative membrane protein
65ECA0576639329..639733 [+], 405putative exported proteinTfc24, T4SS component 
66ECA0577639726..640700 [+], 975putative exported proteinTfc23, T4SS component 
67ECA0578640710..642134 [+], 1425putative exported proteinTfc22, T4SS component 
68ECA0579642137..642508 [+], 372putative exported protein
69ECA0580642505..644037 [+], 1533putative membrane proteinTfc19, T4SS component 
70ECA0581644070..644459 [-], 390putative membrane protein
71ECA0582644602..644961 [-], 360putative plasmid-related protein
72ECA0583644958..645260 [-], 303putative plasmid-related protein
73ECA0584645558..647429 [+], 1872restriction enzyme alpha subunit
74ECA0585647419..648405 [+], 987restriction enzyme beta subunit
75ECA0586648538..648678 [+], 141hypothetical protein
76ECA0586A648731..648898 [+], 168hypothetical protein
77ECA0587649514..650404 [+], 891conserved hypothetical protein
78ECA0588650412..650702 [-], 291putative plasmid-related protein
79ECA0589651097..651408 [+], 312hypothetical protein
80ECA0590651458..651814 [+], 357hypothetical protein
81ECA0591651896..652369 [+], 474hypothetical protein
82ECA0592652458..652862 [+], 405hypothetical protein
83ECA0593653073..653486 [+], 414putative DNA repair protein
84ECA0594653663..654259 [+], 597conserved hypothetical protein
85ECA0595654256..654528 [+], 273conserved hypothetical protein
86ECA0596654599..655084 [+], 486conserved hypothetical protein
87ECA0597655150..657111 [+], 1962conserved hypothetical protein
88ECA0598657186..658079 [+], 894conserved hypothetical protein
89ECA0599658154..659074 [+], 921conserved hypothetical protein
90cfa8B659713..661026 [-], 1314putative oxidoreductase
91cfa8A661110..661541 [-], 432putative oxidoreductase
92cfa7661605..667991 [-], 6387type I polyketide synthase
93cfa6667988..676129 [-], 8142type I polyketide synthase
94cfa5676143..677582 [-], 1440coronafacic acid synthetase, ligase component
95cfa4677579..678112 [-], 534coronafacic acid synthetase component
96cfa3678109..679254 [-], 1146Cfa-beta-ketoacylsynthase
97cfa2679248..679745 [-], 498coronafacic acid dehydratase
98cfa1679742..680017 [-], 276Cfa-acyl carrier protein
99cfl680119..681681 [-], 1563coronafacate ligase
100ECA0610681941..682903 [+], 963LysR-family transcriptional regulator
101ECA0611683332..684792 [+], 1461conserved hypothetical proteinTraI_F, T4SS component 
102ECA0612684912..685403 [+], 492conserved hypothetical protein
103ECA0613685696..687294 [+], 1599conserved hypothetical proteinRelaxase, MOBH Family
104ECA0614687380..688402 [+], 1023putative phage integrase
105ECA0615688832..689677 [+], 846AraC-family transcriptional regulator
106ECA0616689713..690303 [+], 591putative membrane protein
107ECA0617690300..690875 [-], 576conserved hypothetical protein
108dsbD690918..692651 [-], 1734thiol:disulfide interchange protein
109cutA692627..692962 [-], 336periplasmic divalent cation tolerance protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins98Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU