ICEberg
I. Information of ICE
ICEberg ID462
Name SPI-7RKS4594 This is a predicted ICE derived from literature
OrganismSalmonella enterica subsp. enterica serovar Paratyphi C RKS4594
Size (bp)81892
GC content [Genome] (%)49.22
Insertion sitetRNA-PheU
FunctionPathogenicity
Species that ICE can be transferred to-
Nucleotide SequenceCP000857 (complete ICE sequence in this genome)
Replicon chromosome (4833080 bp, BioProject:20993) [NC_012125]
Genome coordinates4496711..4578602 
Putative oriT region -
Putative relaxase coordinates: 4575681..4577246; Locus tag: SPC_4470;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of SPI-7RKS4594 is not available.



The graph information of SPI-7RKS4594 components from CP000857
Complete gene list of SPI-7RKS4594 from CP000857
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SPC_43794491887..4492195 [+], 309Transposase insF for insertion sequence IS3A/B/C/D
2SPC_43804492760..4492960 [+], 201hypothetical protein
3yggM4492998..4493915 [+], 918putative periplasmic protein
4tnpA4494004..4494183 [-], 180putative transposase
5SPC_43844494516..4495049 [-], 534hypothetical protein
6ompX4495987..4496121 [-], 135outer membrane protein X
7SPC_43874496873..4497823 [+], 951hypothetical protein
8SPC_43884497820..4499184 [+], 1365DNA helicase
9SPC_43894499177..4500976 [+], 1800hypothetical protein
10SPC_43904501304..4501450 [+], 147hypothetical protein
11SPC_43914501479..4502159 [+], 681hypothetical protein
12SPC_43924502379..4502801 [+], 423hypothetical protein
13SPC_43934502780..4503049 [+], 270hypothetical protein
14SPC_43944503046..4504389 [+], 1344hypothetical protein
15SPC_43954504425..4504574 [+], 150hypothetical protein
16SPC_43964504978..4505754 [+], 777hypothetical protein
17topB4505865..4507859 [+], 1995DNA topoisomerase I
18SPC_43984508527..4508976 [+], 450hypothetical protein
19SPC_43994509057..4509275 [+], 219hypothetical protein
20ssb4509288..4509824 [+], 537single-strand DNA-binding protein
21SPC_44014509890..4510840 [+], 951Ytl2
22pilL4511005..4512249 [+], 1245pilLTfc2, T4SS component 
23pilM4512252..4512671 [+], 420pilM
24SPC_44064514527..4515669 [+], 1143PilO
25SPC_44074515857..4516237 [+], 381putative PilP
26pilQ4516247..4517962 [+], 1716nucleotide-binding proteinTraJ_I, T4SS component 
27pilR4517959..4519044 [+], 1086pilR
28pilK4519514..4519981 [+], 468pilK
29SPC_44134521541..4522488 [+], 948hypothetical protein
30SPC_44144522507..4523247 [+], 741hypothetical proteinTfc3, T4SS component 
31SPC_44154523361..4523912 [+], 552hypothetical proteinTfc4, T4SS component 
32SPC_44164523948..4524448 [+], 501hypothetical proteinTfc5, T4SS component 
33SPC_44174524647..4525027 [+], 381hypothetical protein
34SPC_44184525047..4527137 [+], 2091hypothetical proteinTfc6, T4SS component 
35SPC_44194527332..4527892 [+], 561hypothetical proteinTfc8, T4SS component 
36SPC_44204528128..4528382 [+], 255hypothetical proteinTfc9, T4SS component 
37SPC_44214528388..4528621 [+], 234hypothetical protein
38SPC_44224528699..4529013 [+], 315hypothetical proteinTfc10, T4SS component 
39SPC_44234529134..4529310 [-], 177hypothetical protein
40SPC_44244529478..4530047 [+], 570putative exported proteinTfc12, T4SS component 
41SPC_44254530047..4530946 [+], 900hypothetical proteinTfc13, T4SS component 
42SPC_44264530960..4532414 [+], 1455hypothetical proteinTfc14, T4SS component 
43SPC_44274532850..4535687 [+], 2838hypothetical proteinTfc16, T4SS component 
44SPC_44284535842..4536228 [+], 387hypothetical proteinTfc17, T4SS component 
45SPC_44294536383..4536775 [+], 393hypothetical proteinTfc24, T4SS component 
46SPC_44304536772..4537740 [+], 969hypothetical proteinTfc23, T4SS component 
47SPC_44314537788..4539185 [+], 1398hypothetical proteinTfc22, T4SS component 
48SPC_44324539182..4539514 [+], 333hypothetical protein
49SPC_44334539518..4541023 [+], 1506hypothetical proteinTfc19, T4SS component 
50SPC_44344541059..4541448 [-], 390hypothetical protein
51SPC_44354541672..4541794 [-], 123putative exported protein
52SPC_44364541835..4542017 [+], 183hypothetical protein
53SPC_44374542318..4543565 [+], 1248hypothetical protein
54SPC_44384543577..4544191 [+], 615hypothetical protein
55SPC_44394544402..4544944 [-], 543hypothetical protein
56SPC_44404546257..4547177 [+], 921hypothetical proteinIntegrase 
57SPC_44414547868..4548203 [+], 336hypothetical protein
58SPC_44424548299..4548679 [+], 381hypothetical protein
59SPC_44434549050..4549259 [+], 210hypothetical protein
60SPC_44444549277..4549678 [+], 402hypothetical protein
61SPC_44454549715..4550011 [+], 297hypothetical protein
62SPC_44464550089..4550547 [+], 459hypothetical protein
63SPC_44474550636..4552585 [+], 1950hypothetical protein
64SPC_44484552657..4553565 [+], 909hypothetical protein
65SPC_44494553639..4554538 [+], 900hypothetical protein
66SPC_44504554614..4554940 [+], 327hypothetical protein
67SPC_44514555040..4555195 [-], 156hypothetical protein
68samB4555441..4556715 [-], 1275DNA polymerase IV
69SPC_44534556715..4556921 [-], 207mutagenesis by UV and mutagens-related protein
70SPC_44544557405..4557518 [+], 114hypothetical protein
71SPC_44554557760..4558041 [+], 282hypothetical protein
72SPC_44564558052..4558942 [+], 891putative methyltransferase
73yjhP4558942..4559688 [+], 747yjhP
74vexE4559990..4561960 [-], 1971Vi polysaccharide export protein
75vexD4561980..4563284 [-], 1305Vi polysaccharide export inner-membrane protein
76vexC4563307..4563948 [-], 642Vi polysaccharide export ATP-binding protein
77vexB4564028..4564822 [-], 795Vi polysaccharide export inner-membrane protein (ABC-2 type transporter)
78vexA4564832..4565899 [-], 1068Vi polysaccharide export protein
79tviE4565944..4567680 [-], 1737Vi polysaccharide biosynthesis protein TviE
80tviD4567680..4570175 [-], 2496Vi polysaccharide biosynthesis protein
81tviC4570199..4571245 [-], 1047Vi polysaccharide biosynthesis protein, epimerase
82tviB4571248..4572525 [-], 1278Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase
83tviA4572770..4573201 [-], 432Vi polysaccharide biosynthesis protein
84SPC_44684573849..4574037 [+], 189hypothetical protein
85SPC_44694574162..4575673 [+], 1512putative DNA helicaseTraI_F, T4SS component 
86SPC_44704575681..4577246 [+], 1566hypothetical proteinRelaxase, MOBH Family
87yjdC4578793..4579368 [-], 576putative transcriptional regulator
88dsbD4579405..4581108 [-], 1704thiol:disulfide interchange protein precursor
89cutA4581084..4581437 [-], 354periplasmic divalent cation tolerance protein CutA
90dcuA4581552..4582853 [-], 1302anaerobic C4-dicarboxylate transporter
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins80Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU