ICEberg
I. Information of ICE
ICEberg ID457
Name ICEVspSpa3 This ICE is derived from experimental literature
ICEO ID ICEO_0000650
OrganismVibrio splendidus 14-3
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred toEscherichia coli CAG18420; Escherichia coli BI533
Nucleotide SequenceHE577619 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVspSpa3 is not available.



The graph information of ICEVspSpa3 components from HE577619
Incomplete gene list of ICEVspSpa3 from HE577619
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1rumB1..477 [-], 477putative DNA repair protein
2tnp761..1354 [+], 594putative transposase
3s0212777..3220 [-], 444hypothetical protein
4rumB'3427..3735 [-], 309putative DNA repair protein
5ORF363990..4156 [+], 167putative conjugation coupling factor
6ORF374184..4770 [-], 587hypothetical protein
7traA5050..5261 [+], 212putative TraA transfer proteinTraA_F, T4SS component 
8cspa3-26257..6773 [-], 517hypothetical protein
9traN7298..7495 [+], 198putative TraN pilus assembly and synthesis proteinTraN_F, T4SS component 
10ORF648089..8751 [+], 663hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins10Fasta
(1) Rodriguez-Blanco A; Lemos ML; Osorio CR (2012). Integrating conjugative elements as vectors of antibiotic, mercury, and quaternary ammonium compound resistance in marine aquaculture environments. Antimicrob Agents Chemother. 56(5):2619-26. [PubMed:22314526] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU