ICEberg
I. Information of ICE
ICEberg ID456
Name ICEVspSpa2 This ICE is derived from experimental literature
ICEO ID ICEO_0000649
OrganismVibrio splendidus EB5
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred toEscherichia coli CAG18420; Escherichia coli BI533
Nucleotide SequenceHE577622 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVspSpa2 is not available.



The graph information of ICEVspSpa2 components from HE577622
Incomplete gene list of ICEVspSpa2 from HE577622
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1tnp1400..1993 [+], 594putative transposase
2tnpA2107..3416 [+], 1310putative transposase
3rumB'4064..4372 [-], 309putative DNA repair protein
4rumA4341..4613 [-], 273putative DNA repair protein
5ORF364630..4671 [+], 42putative conjugation coupling factor
6ORF374698..5285 [-], 588hypothetical protein
7ORF385299..5538 [-], 240hypothetical protein
8traA5588..5826 [+], 239putative TraA transfer proteinTraA_F, T4SS component 
9traN8051..8249 [+], 199putative TraN pilus assembly and synthesis proteinTraN_F, T4SS component 
10ORF648843..9505 [+], 663hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins10Fasta
(1) Rodriguez-Blanco A; Lemos ML; Osorio CR (2012). Integrating conjugative elements as vectors of antibiotic, mercury, and quaternary ammonium compound resistance in marine aquaculture environments. Antimicrob Agents Chemother. 56(5):2619-26. [PubMed:22314526] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU