ICEberg
I. Information of ICE
ICEberg ID453
Name ICEVspPor1 This ICE is derived from experimental literature
ICEO ID ICEO_0000646
OrganismVibrio splendidus ZD4
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred toEscherichia coli CAG18420; Escherichia coli BI533
Nucleotide SequenceHE577628 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVspPor1 is not available.



The graph information of ICEVspPor1 components from HE577628
Incomplete gene list of ICEVspPor1 from HE577628
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1rumB1..982 [-], 982putative DNA repair protein
2tnp1266..1859 [+], 594putative transposase
3tnpA1973..3282 [+], 1310putative transposase
4ORF364388..4434 [+], 47putative conjugation coupling factor
5ORF374461..4975 [-], 515hypothetical protein
6traN7616..7801 [+], 186putative TraN pilus assembly and synthesis proteinTraN_F, T4SS component 
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins6Fasta
(1) Rodriguez-Blanco A; Lemos ML; Osorio CR (2012). Integrating conjugative elements as vectors of antibiotic, mercury, and quaternary ammonium compound resistance in marine aquaculture environments. Antimicrob Agents Chemother. 56(5):2619-26. [PubMed:22314526] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU