ICEberg
I. Information of ICE
ICEberg ID441
Name ICEHso2336-1 This is a predicted ICE derived from literature
OrganismHaemophilus somnus 2336
Size (bp)66609
GC content [Genome] (%)40.43
Insertion sitetRNA-Leu [DRs: GATTTTGAATCAA]
FunctiontetR-tet (H)
Species that ICE can be transferred to-
Nucleotide SequenceCP000947 (complete ICE sequence in this genome)
Replicon chromosome (2263857 bp, BioProject:388) [NC_010519]
Genome coordinates1927921..1994529 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEHso2336-1 is not available.



The graph information of ICEHso2336-1 components from CP000947
Complete gene list of ICEHso2336-1 from CP000947
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HSM_16711923399..1923815 [+], 417transposase IS200-family protein
2HSM_16721923959..1924198 [-], 240conserved hypothetical protein
3HSM_16731924199..1924444 [-], 246conserved hypothetical protein
4HSM_16741924454..1924675 [-], 222phage transcriptional regulator, AlpA
5HSM_16751924840..1925814 [-], 975hypothetical protein
6HSM_16761926347..1927594 [-], 1248phage integrase family protein
7HSM_16771928343..1928921 [+], 579hypothetical protein
8HSM_16781929653..1930090 [-], 438hypothetical protein
9HSM_16791930240..1931139 [+], 900phage integrase family proteinIntegrase 
10HSM_16801931538..1932512 [+], 975Integrase catalytic region
11HSM_16811932585..1933382 [-], 798putative type I restriction enzyme M subunit
12HSM_16821933455..1934201 [-], 747conserved hypothetical protein
13HSM_16831934341..1935315 [-], 975domain of unknown function DUF1738
14HSM_16841935560..1935967 [-], 408Haemophilus-specific protein, uncharacterized
15HSM_16851936083..1936925 [-], 843hypothetical protein
16HSM_16861937003..1937398 [-], 396hypothetical protein
17HSM_16871937497..1937742 [-], 246Haemophilus-specific protein, uncharacterized
18HSM_16881937814..1938167 [-], 354hypothetical protein
19HSM_16891938541..1938984 [+], 444protein of unknown function DUF1525Tfc24, T4SS component 
20HSM_16901938981..1939922 [+], 942protein of unknown function DUF1527Tfc23, T4SS component 
21HSM_16911939940..1941952 [+], 2013conserved hypothetical proteinTfc22, T4SS component 
22HSM_16921941973..1942401 [+], 429conserved hypothetical proteinTfc21, T4SS component 
23HSM_16931942617..1943087 [+], 471unknown phage protein
24HSM_16941943108..1943449 [+], 342hypothetical proteinTfc20, T4SS component 
25HSM_16951943495..1944967 [-], 1473conserved putative membrane proteinTfc19, T4SS component 
26HSM_16961944978..1945295 [-], 318Haemophilus-specific protein, uncharacterizedTfc18, T4SS component 
27HSM_16971945285..1945713 [-], 429conserved hypothetical proteinTfc17, T4SS component 
28HSM_16981945713..1948550 [-], 2838conserved hypothetical proteinTfc16, T4SS component 
29HSM_16991948553..1948951 [-], 399conserved hypothetical proteinTfc15, T4SS component 
30HSM_17001948964..1950418 [-], 1455conserved hypothetical proteinTfc14, T4SS component 
31HSM_17011950430..1951314 [-], 885conserved hypothetical proteinTfc13, T4SS component 
32HSM_17021951314..1951958 [-], 645conserved hypothetical proteinTfc12, T4SS component 
33HSM_17031951962..1952327 [-], 366conserved hypothetical proteinTfc11, T4SS component 
34HSM_17041952350..1952739 [-], 390Haemophilus-specific protein, uncharacterizedTfc10, T4SS component 
35HSM_17051952754..1952990 [-], 237Haemophilus-specific protein, uncharacterized
36HSM_17061952987..1953313 [-], 327conserved hypothetical proteinTfc9, T4SS component 
37HSM_17071953500..1953883 [+], 384hypothetical protein
38HSM_17081953915..1954610 [-], 696conserved putative membrane proteinTfc8, T4SS component 
39HSM_17091954607..1954960 [-], 354Haemophilus-specific protein, uncharacterizedTfc7, T4SS component 
40HSM_17101954953..1957154 [-], 2202conserved hypothetical proteinTfc6, T4SS component 
41HSM_17111957154..1957660 [-], 507conserved hypothetical proteinTfc5, T4SS component 
42HSM_17121957663..1958433 [-], 771conserved putative exported proteinTfc4, T4SS component 
43HSM_17131958412..1959185 [-], 774conserved hypothetical proteinTfc3, T4SS component 
44HSM_17141959185..1959814 [-], 630conserved putative lipoproteinTfc2, T4SS component 
45HSM_17151959973..1960233 [-], 261conserved hypothetical protein
46HSM_17161960346..1960708 [-], 363Haemophilus-specific protein, uncharacterized
47HSM_17171960788..1961195 [-], 408conserved hypothetical protein
48HSM_17181961221..1961901 [-], 681hypothetical protein
49HSM_17191962007..1962438 [-], 432conserved hypothetical protein
50HSM_17201963256..1965307 [-], 2052DNA topoisomerase III
51HSM_17211965467..1965985 [-], 519Haemophilus-specific protein, uncharacterized
52HSM_17221966462..1967172 [+], 711Haemophilus-specific protein, uncharacterized
53HSM_17231967711..1968478 [-], 768aldo/keto reductase
54HSM_17241968477..1968797 [+], 321hypothetical protein
55HSM_17251968979..1969434 [+], 456protein of unknown function DUF411
56HSM_17261969449..1970996 [+], 1548multicopper oxidase type 3
57HSM_17271971086..1971241 [-], 156alcohol dehydrogenase, zinc-binding domain protein
58HSM_17281971664..1972068 [+], 405putative transcriptional regulator, MerR family
59HSM_17291972283..1972600 [-], 318protein of unknown function DUF411
60HSM_17301972853..1974457 [-], 1605multicopper oxidase type 3
61HSM_17311974826..1977018 [-], 2193heavy metal translocating P-type ATPase
62HSM_17321977326..1978072 [-], 747protein of unknown function DUF305
63HSM_17331978360..1978878 [+], 519conserved hypothetical protein
64HSM_17341978881..1979504 [-], 624transcriptional regulator, TetR family
65HSM_17351979596..1980798 [+], 1203major facilitator superfamily MFS_1
66HSM_17361980899..1981231 [-], 333small multidrug resistance protein
67HSM_17371981270..1981719 [-], 450transcriptional regulator, MarR family
68HSM_17381981742..1982113 [-], 372protein of unknown function DUF1304
69HSM_17391982332..1983432 [-], 1101conserved hypothetical protein
70HSM_17401983604..1984218 [-], 615cation efflux protein
71HSM_17411984290..1984688 [+], 399putative transcriptional regulator, MerR family
72HSM_17421984727..1984873 [+], 147conserved hypothetical protein
73HSM_17431984910..1985062 [+], 153conserved hypothetical protein
74HSM_17441985115..1985723 [-], 609Alcohol dehydrogenase zinc-binding domain protein
75HSM_17451986316..1986768 [-], 453single-strand binding protein
76HSM_17461987102..1987587 [-], 486conserved hypothetical protein
77HSM_17471987596..1988354 [-], 759conserved hypothetical protein
78HSM_17481988533..1989723 [-], 1191conserved hypothetical protein
79HSM_17491989882..1990439 [-], 558conserved hypothetical protein
80HSM_17501990432..1992078 [-], 1647conserved hypothetical protein
81HSM_17511992087..1993448 [-], 1362replicative DNA helicase
82HSM_17521993460..1994284 [-], 825ATPase involved in chromosome partitioning
83HSM_17531994707..1995777 [-], 1071permease YjgP/YjgQ family protein
84HSM_17541995790..1996893 [-], 1104permease YjgP/YjgQ family protein
85HSM_17551997012..1998499 [+], 1488Leucyl aminopeptidase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins76Fasta
(1) Michael GB; Kadlec K; Sweeney MT; Brzuszkiewicz E; Liesegang H; Daniel R; Murray RW; Watts JL; Schwarz S (2012). ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: structure and transfer. J Antimicrob Chemother. 67(1):91-100. [PubMed:22001176] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU