ICEberg
I. Information of ICE
ICEberg ID438
Name phn Island This ICE is derived from experimental literature
ICEO ID ICEO_0000179
OrganismDelftia sp. Cs1-4
Size (bp)240848
GC content [Genome] (%)66.26[66.72]
Insertion siteDelCs14_1618
Functionphenanthrene degrading
Species that ICE can be transferred to-
Nucleotide SequenceNC_015563 (complete ICE sequence in this genome)
Replicon chromosome (6685842 bp, BioProject:67319) [NC_015563]
Genome coordinates1833691..2074538 
Putative oriT region -
Putative relaxase coordinates: 1924622..1926400; Locus tag: DelCs14_1705;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of phn Island is not available.



The graph information of phn Island components from NC_015563
Complete gene list of phn Island from NC_015563
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1DelCs14_16141828712..1829215 [+], 504hypothetical protein
2DelCs14_16151829246..1830322 [+], 1077signal transduction histidine kinase, nitrogen specific, NtrB
3DelCs14_16161830368..1831939 [+], 1572Fis family nitrogen metabolism transcriptional regulator NtrC
4DelCs14_16171832042..1832896 [+], 855hypothetical protein
5DelCs14_16181832912..1833691 [-], 780exodeoxyribonuclease III Xth
6DelCs14_16191833977..1834600 [+], 624hypothetical protein
7DelCs14_16201835741..1837240 [-], 1500betaine-aldehyde dehydrogenase
8DelCs14_16211837813..1838274 [-], 462regulatory protein MarR
9DelCs14_16221838563..1839654 [-], 1092LacI family transcriptional regulator
10DelCs14_16231839824..1840792 [-], 969Tat pathway signal sequence domain-containing protein 13
11DelCs14_16241841079..1842455 [+], 1377MmgE/PrpD family protein
12DelCs14_16251842475..1842963 [+], 489MaoC domain-containing protein dehydratase
13DelCs14_16261842966..1844126 [+], 1161butyryl-CoA dehydrogenase
14DelCs14_16271844123..1844602 [+], 480MaoC domain-containing protein dehydratase
15DelCs14_16281844599..1845825 [+], 1227fomryl-CoA transferase
16DelCs14_16291845845..1846756 [+], 912citryl-CoA lyase
17DelCs14_16301846826..1848010 [+], 1185extracellular ligand-binding receptor
18DelCs14_16311848036..1848902 [+], 867ABC transporter permease
19DelCs14_16321848899..1849924 [+], 1026ABC transporter permease
20DelCs14_16331849929..1850762 [+], 834molybdate-transporting ATPase
21DelCs14_16341850762..1851454 [+], 693phosphonate-transporting ATPase
22DelCs14_16351851479..1852846 [+], 1368MmgE/PrpD family protein
23DelCs14_16361852868..1853680 [+], 8133-oxoacyl-ACP reductase
24DelCs14_16371853677..1854684 [+], 1008NAD(P)H quinone oxidoreductase
25DelCs14_16381854715..1855848 [+], 1134amidohydrolase 2
26DelCs14_16391855845..1856753 [+], 909citryl-CoA lyase
27DelCs14_16401857360..1857575 [+], 216hypothetical protein
28DelCs14_16411857572..1858750 [+], 1179major facilitator superfamily protein
29DelCs14_16421859127..1860776 [+], 1650methyl-accepting chemotaxis sensory transducer with Cache sensor
30DelCs14_16431861748..1862614 [+], 867Naphthoate synthase
31DelCs14_16441862611..1863594 [+], 984amidohydrolase 2
32DelCs14_16451863611..1865266 [+], 1656o-succinylbenzoate--CoA ligase
33DelCs14_16461865357..1866088 [+], 732hypothetical protein
34DelCs14_16471866236..1866706 [+], 471LysR family transcriptional regulator
35DelCs14_16481866831..1867280 [+], 450aspartate 1-decarboxylase
36DelCs14_16491867603..1868589 [+], 987exported protein
37DelCs14_16501869351..1870397 [+], 1047putative porin
38DelCs14_16511870579..1871565 [+], 987hypothetical protein
39DelCs14_16531871938..1872759 [-], 822IclR family transcriptional regulator
40DelCs14_16541873045..1873515 [+], 471hemerythrin-like metal-binding protein
41DelCs14_16551873573..1874892 [+], 1320Phthalate 4,5-dioxygenase
42DelCs14_16561874895..1875884 [+], 9904,5-dihydroxyphthalate decarboxylase
43DelCs14_16571875889..1876755 [+], 867nicotinate-nucleotide pyrophosphorylase
44DelCs14_16581876772..1877743 [+], 972Phthalate 4,5-dioxygenase
45DelCs14_16591877740..1878939 [+], 1200oxidoreductase domain-containing protein
46DelCs14_16601879158..1879775 [+], 618hypothetical protein
47DelCs14_16611879943..1881205 [+], 1263Phthalate 4,5-dioxygenase
48DelCs14_16621881280..1881564 [+], 285hypothetical protein
49DelCs14_16641883134..1884717 [+], 1584integrase catalytic subunit
50DelCs14_16651884710..1885510 [+], 801IstB domain-containing protein ATP-binding proteinTrbB, T4SS component 
51DelCs14_16661885507..1885731 [+], 225hypothetical protein
52DelCs14_16671886430..1887122 [+], 693putative ABC transporter periplasmic molybdate binding protein
53DelCs14_16681887146..1888180 [+], 1035amidohydrolase 2
54DelCs14_16691888182..1888865 [+], 6844-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
55DelCs14_16701888877..1889809 [+], 933phosphogluconate dehydrogenase, NAD-binding protein
56DelCs14_16711889806..1890723 [+], 918amidohydrolase 2
57DelCs14_16721890726..1891151 [+], 426protocatechuate 4,5-dioxygenase subunit alpha
58DelCs14_16731891153..1892007 [+], 855protocatechuate 4,5-dioxygenase
59DelCs14_16741892004..1892960 [+], 957oxidoreductase domain-containing protein
60DelCs14_16751892969..1893976 [+], 1008pyridoxine 4-dehydrogenase
61DelCs14_16761894020..1895018 [-], 999cobalamin synthesis protein P47K
62DelCs14_16771895500..1896450 [-], 951alpha/beta hydrolase fold protein
63DelCs14_16791899396..1899734 [+], 339hypothetical protein
64DelCs14_16801899740..1902514 [-], 2775TraG domain-containing proteinTraG_F, T4SS component 
65DelCs14_16811902534..1903982 [-], 1449TraH family proteinTraH_F, T4SS component 
66DelCs14_16821903992..1904867 [-], 876TraF-like proteinTraF_F, T4SS component 
67DelCs14_16831904877..1905269 [-], 393hypothetical protein
68DelCs14_16841905266..1907680 [-], 2415conjugal transfer mating pair stabilization protein TraNTraN_F, T4SS component 
69DelCs14_16851907690..1908436 [-], 747type-F conjugative transfer system pilin assembly protein TrbCTrbC_F, T4SS component 
70DelCs14_16861908438..1909457 [-], 1020TraU family proteinTraU_F, T4SS component 
71DelCs14_16871909454..1910083 [-], 630type-F conjugative transfer system protein TraWTraW_F, T4SS component 
72DelCs14_16881910080..1910490 [-], 411hypothetical protein
73DelCs14_16891910502..1911092 [-], 591conjugative transfer signal peptidase TraFTraF_F, T4SS component 
74DelCs14_16901911089..1911460 [-], 372hypothetical protein
75DelCs14_16911911457..1914039 [-], 2583type-IV secretion system protein TraCTraC_F, T4SS component 
76DelCs14_16921914061..1914711 [-], 651Type IV conjugative transfer system protein TraVTraV_F, T4SS component 
77DelCs14_16931914708..1915556 [-], 849disulfide bond isomerase DsbC/GTrbB_I, T4SS component 
78DelCs14_16941915540..1916943 [-], 1404TraB pilus assembly family proteinTraB_F, T4SS component 
79DelCs14_16951916940..1917944 [-], 1005hypothetical proteinTraK_F, T4SS component 
80DelCs14_16961917931..1918497 [-], 567type IV conjugative transfer system protein TraETraE_F, T4SS component 
81DelCs14_16971918511..1918810 [-], 300type IV conjugative transfer system protein TraLTraL_F, T4SS component 
82DelCs14_16981918842..1919204 [-], 363hypothetical protein
83DelCs14_16991919396..1920211 [-], 816OmpA/MotB domain-containing protein
84DelCs14_17001920208..1920750 [-], 543lytic transglycosylase catalytic subunitOrf169_F, T4SS component 
85DelCs14_17011920916..1921425 [-], 510hypothetical protein
86DelCs14_17021921666..1922016 [+], 351histone family protein nucleoid-structuring protein H-NS
87DelCs14_17031922102..1922725 [-], 624hypothetical protein
88DelCs14_17041922722..1924620 [-], 1899conjugative coupling factor TraDTraD_F, T4SS component 
89DelCs14_17051924622..1926400 [-], 1779RelaxaseRelaxase, MOBH Family
90DelCs14_17061926488..1927135 [-], 648flagellar transcriptional activator FlhC
91DelCs14_17071927143..1927469 [-], 327hypothetical protein
92DelCs14_17081927732..1928523 [+], 792putative phage repressor
93DelCs14_17091929118..1930179 [-], 1062hypothetical protein
94DelCs14_17101930499..1931506 [-], 1008P4 alpha zinc-binding domain-containing protein
95DelCs14_17111931639..1931947 [-], 309hypothetical protein
96DelCs14_17121931944..1932165 [-], 222hypothetical protein
97DelCs14_17131932229..1932792 [-], 564hypothetical protein
98DelCs14_17141933275..1934258 [+], 984hypothetical protein
99DelCs14_17151934854..1935102 [+], 249prophage CP4-57 regulatory
100DelCs14_17161935164..1935412 [+], 249PilT protein domain-containing protein
101DelCs14_17171935412..1935555 [+], 144hypothetical protein
102DelCs14_17181935620..1937209 [+], 1590filamentation induced by cAMP protein fic
103DelCs14_17191937338..1938234 [+], 897integrase family protein
104DelCs14_17201938385..1938627 [+], 243hypothetical protein
105DelCs14_17211938923..1939180 [+], 258helix-turn-helix domain-containing protein
106DelCs14_17221939376..1939909 [-], 534hypothetical protein
107DelCs14_17231940256..1940453 [-], 198hypothetical protein
108DelCs14_17241940457..1940636 [-], 180hypothetical protein
109DelCs14_17251941260..1942711 [-], 1452hypothetical protein
110DelCs14_17261942816..1943736 [-], 921LysR family transcriptional regulator
111DelCs14_17271943831..1944808 [+], 978hypothetical protein
112DelCs14_17281944820..1946988 [+], 2169CoA-binding domain-containing protein
113DelCs14_17291947013..1947789 [+], 777enoyl-CoA hydratase/isomerase
114DelCs14_17301947992..1949236 [+], 1245hypothetical protein
115DelCs14_17311949328..1950266 [+], 939hypothetical protein
116DelCs14_17321950579..1951268 [+], 690LuxR family transcriptional regulator
117DelCs14_17331951368..1951787 [+], 420hypothetical protein
118DelCs14_17341951836..1952438 [+], 603acyl-homoserine-lactone synthase
119DelCs14_17351952853..1953173 [+], 321hypothetical protein
120DelCs14_17361953482..1954150 [-], 669hypothetical protein
121DelCs14_17371954580..1955107 [-], 528hypothetical protein
122DelCs14_17381955145..1956755 [-], 1611transposase IS66
123DelCs14_17391956786..1957577 [-], 792hypothetical protein
124DelCs14_17401957822..1958163 [+], 342Rieske (2Fe-2S) domain-containing protein
125DelCs14_17411958163..1959215 [+], 1053ferredoxin--NAD(+) reductase
126DelCs14_17421959314..1960147 [+], 834Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
127DelCs14_17431960204..1961562 [+], 1359Naphthalene 1,2-dioxygenase
128DelCs14_17441961592..1962110 [+], 519aromatic-ring-hydroxylating dioxygenase subunit beta
129DelCs14_17451962269..1962859 [+], 591DSBA oxidoreductase
130DelCs14_17461962997..1963959 [+], 963transposase IS4 family protein
131DelCs14_17471964248..1964943 [+], 696TetR family transcriptional regulator
132DelCs14_17481965022..1965636 [+], 615glutathione S-transferase domain-containing protein
133DelCs14_17491965714..1966676 [+], 963dihydrodipicolinate synthetase
134DelCs14_17501966722..1967765 [+], 1044Cupin 2 barrel domain-containing protein
135DelCs14_17521968208..1969650 [-], 1443transposase IS4 family protein
136DelCs14_17531970909..1971502 [-], 594regulatory protein MarR
137DelCs14_17541971721..1972629 [+], 909biphenyl-2,3-diol 1,2-dioxygenase
138DelCs14_17551972705..1974240 [+], 1536betaine-aldehyde dehydrogenase
139DelCs14_17561974343..1976016 [+], 1674hypothetical protein
140DelCs14_17571976027..1977388 [+], 1362hypothetical protein
141DelCs14_17581977605..1978612 [+], 1008BNR repeat-containing protein
142DelCs14_17591978618..1981011 [+], 2394transporter
143DelCs14_17601981224..1982222 [+], 999dihydrodipicolinate synthetase
144DelCs14_17611982351..1983334 [+], 984transposase IS4 family protein
145DelCs14_17621983496..1984431 [+], 936hypothetical protein
146DelCs14_17641984863..1986293 [+], 1431transposase
147DelCs14_17651986783..1988321 [+], 1539integrase catalytic subunit
148DelCs14_17661988310..1989014 [-], 705IstB domain-containing protein ATP-binding proteinTrbB, T4SS component 
149DelCs14_17681989830..1990462 [+], 633N-carbamoylsarcosine amidase
150DelCs14_17691990469..1991953 [+], 1485betaine-aldehyde dehydrogenase
151DelCs14_17701992400..1993131 [+], 732hypothetical protein
152DelCs14_17711993993..1996176 [+], 2184helicase c2
153DelCs14_17721996277..1997200 [-], 924LysR family transcriptional regulator
154DelCs14_17731997309..1997611 [+], 303hypothetical protein
155DelCs14_17741997809..1998348 [-], 540hypothetical protein
156DelCs14_17751998338..1999096 [-], 759hypothetical protein
157DelCs14_17761999111..1999545 [-], 435hypothetical protein
158DelCs14_17772000188..2000859 [-], 672hypothetical protein
159DelCs14_17782000954..2001565 [-], 612hypothetical protein
160DelCs14_17792002300..2002623 [+], 324hypothetical protein
161DelCs14_17802002845..2003159 [-], 315hypothetical protein
162DelCs14_17812003299..2003553 [-], 255hypothetical protein
163DelCs14_17822003788..2004249 [-], 462hypothetical protein
164DelCs14_17832004698..2005405 [+], 708hypothetical protein
165DelCs14_17842005353..2006129 [+], 777cell filamentation protein
166DelCs14_17852006519..2007460 [-], 942AraC family transcriptional regulator
167DelCs14_17862007515..2008963 [+], 1449EmrB/QacA subfamily drug resistance transporter
168DelCs14_17872009048..2009374 [+], 327hypothetical protein
169DelCs14_17882009591..2010562 [-], 972extra-cytoplasmic solute receptor
170DelCs14_17902011850..2013073 [-], 1224hypothetical protein
171DelCs14_17912013344..2014243 [+], 900hypothetical protein
172DelCs14_17922014195..2014623 [+], 429hypothetical protein
173DelCs14_17932014688..2015197 [+], 510hypothetical protein
174DelCs14_17942015599..2015922 [+], 324hypothetical protein
175DelCs14_17952015923..2016228 [+], 306hypothetical protein
176DelCs14_17962016351..2017085 [+], 735hypothetical protein
177DelCs14_17972017082..2018038 [+], 957hypothetical protein
178DelCs14_17982018038..2019990 [+], 1953regulatory protein MerR
179DelCs14_17992020147..2021184 [+], 1038hypothetical protein
180DelCs14_18002021181..2021357 [+], 177hypothetical protein
181DelCs14_18012021399..2021923 [+], 525hypothetical protein
182DelCs14_18022022047..2022334 [+], 288hypothetical protein
183DelCs14_18032022331..2022699 [+], 369hypothetical protein
184DelCs14_18042022896..2023396 [+], 501hypothetical protein
185DelCs14_18052023374..2024138 [-], 765hypothetical protein
186DelCs14_18062024174..2025046 [-], 873hypothetical protein
187DelCs14_18072025051..2025653 [-], 603hypothetical protein
188DelCs14_18082025654..2026904 [-], 1251hypothetical protein
189DelCs14_18092027172..2027549 [+], 378helix-turn-helix domain-containing protein
190DelCs14_18102027546..2028421 [+], 876hypothetical protein
191DelCs14_18112028422..2028880 [-], 459hypothetical protein
192DelCs14_18122028877..2030946 [-], 2070integrase family protein
193DelCs14_18142032460..2033611 [-], 1152integrase family protein
194DelCs14_18162034627..2035244 [+], 618hypothetical protein
195DelCs14_18172035311..2035703 [-], 393histone family protein DNA-binding protein
196DelCs14_18182035922..2037721 [+], 1800PRTRC system ParB family protein
197DelCs14_18192037814..2038302 [+], 489PRTRC system protein E
198DelCs14_18202038400..2038858 [+], 459hypothetical protein
199DelCs14_18212038855..2039913 [+], 1059PRTRC system protein F
200DelCs14_18222039939..2040679 [+], 741PRTRC system protein B
201DelCs14_18232040679..2041377 [+], 699PRTRC system protein A
202DelCs14_18242041374..2042303 [+], 930PRTRC system ThiF family protein
203DelCs14_18252042801..2044951 [+], 2151ParB domain-containing protein nuclease
204DelCs14_18262045056..2045265 [+], 210hypothetical protein
205DelCs14_18272045417..2046619 [-], 1203phage integrase, N-terminal SAM-like protein
206DelCs14_18282047970..2049637 [+], 1668hypothetical protein
207DelCs14_18302050978..2052249 [+], 1272transposase mutator type
208DelCs14_18322052897..2053223 [+], 327transposase IS3/IS911 family protein
209DelCs14_18342054123..2055172 [+], 1050transposase IS116/IS110/IS902 family protein
210DelCs14_18352055625..2056650 [+], 1026PRTRC system protein D
211DelCs14_18362056637..2056948 [+], 312hypothetical protein
212DelCs14_18372057186..2058205 [+], 1020PRTRC system protein D
213DelCs14_18382058202..2058513 [+], 312hypothetical protein
214DelCs14_18392058613..2058837 [-], 225hypothetical protein
215DelCs14_18402058834..2059634 [-], 801IstB domain-containing protein ATP-binding proteinTrbB, T4SS component 
216DelCs14_18412059627..2061210 [-], 1584integrase catalytic subunit
217DelCs14_18422062158..2062625 [+], 468hypothetical protein
218DelCs14_18432062615..2063142 [+], 528hypothetical protein
219DelCs14_18442063236..2065146 [-], 1911UvrD/REP helicase
220DelCs14_18452065149..2067125 [-], 1977SMC domain-containing protein
221DelCs14_18462067288..2068544 [-], 1257integrase family proteinIntegrase 
222DelCs14_18472068940..2071786 [+], 2847peptidase M50
223DelCs14_18482072480..2073166 [+], 687fimbrial protein domain-containing protein
224DelCs14_18492073267..2074538 [+], 1272cytosine deaminase
225DelCs14_18502074574..2075293 [-], 720Crp/Fnr family transcriptional regulator
226DelCs14_18512075345..2076256 [-], 912LysR family transcriptional regulator
227DelCs14_18522076408..2077409 [+], 1002hypothetical protein
228DelCs14_18532077406..2078698 [+], 1293hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins219Fasta
(1) Hickey WJ; Chen S; Zhao J (2012). The phn Island: A New Genomic Island Encoding Catabolism of Polynuclear Aromatic Hydrocarbons. Front Microbiol. 0.211805556. [PubMed:22493593] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU