ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	433
Name	ICESpnR6-1
Organism	Streptococcus pneumoniae R6
Size (bp)	36386
GC content [Genome] (%)	31.55[39.72]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AE007317 (complete ICE sequence in this genome)
Replicon	chromosome (2038615 bp, BioProject:278) [NC_003098]
Genome coordinates	919089..955474
Putative oriT region	-
Putative relaxase	coordinates: 938857..939474; Locus tag: spr0957; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of ICESpnR6-1 is not available.

The graph information of ICESpnR6-1 components from AE007317

Complete gene list of ICESpnR6-1 from AE007317
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	spr0929	914516..915523 [+], 1008	Hypothetical protein
2	spr0930	915523..916137 [+], 615	Conserved hypothetical protein
3	spr0931	916211..917185 [+], 975	Conserved hypothetical protein
4	spr0932	917259..918890 [+], 1632	Conserved hypothetical protein
5	spr0933	919628..919846 [+], 219	Hypothetical protein
6	ABC-SBP	920239..921264 [+], 1026	ABC transporter substrate-binding protein - iron transport
7	ABC-MSP	921242..922261 [+], 1020	ABC transporter membrane-spanning permease - iron transport
8	ABC-MSP	922261..923268 [+], 1008	ABC transporter membrane-spanning permease - iron transport
9	spr0937	922743..923156 [-], 414	Hypothetical protein
10	ABC-NBD	923268..924062 [+], 795	ABC transporter ATP-binding protein - iron transport
11	spr0939	924630..924839 [+], 210	Hypothetical protein
12	spr0940	924964..925119 [+], 156	Hypothetical protein
13	spr0941	925803..925964 [+], 162	Hypothetical protein
14	ccrB	926056..927735 [+], 1680	Low similarity to site-specific recombinase	Integrase
15	spr0943	927958..928569 [+], 612	Hypothetical protein
16	spr0944	928882..929079 [+], 198	Hypothetical protein
17	spr0945	929141..929956 [+], 816	Hypothetical protein
18	spr0946	929956..930810 [+], 855	Conserved hypothetical protein
19	spr0947	930871..931806 [+], 936	Conserved hypothetical protein
20	nplT	931945..933708 [+], 1764	Neopullulanase
21	spr0949	933794..934111 [+], 318	Hypothetical protein
22	spr0950	934157..934438 [+], 282	Hypothetical protein
23	spr0951	934826..935359 [+], 534	Hypothetical protein
24	spr0952	935359..936120 [+], 762	Conserved hypothetical protein
25	spr0953	936148..936924 [+], 777	Hypothetical protein
26	spr0954	936852..937304 [+], 453	Hypothetical protein
27	spr0955	938136..938495 [+], 360	Hypothetical protein
28	spr0956	938505..938834 [+], 330	Hypothetical protein
29	spr0957	938857..939474 [+], 618	Tn5252, relaxase, truncation	Relaxase, MOB_P Family
30	spr0958	939505..940062 [+], 558	Tn5252, relaxase, truncation
31	spr0959	940146..940742 [+], 597	Hypothetical protein
32	mutR	940787..941641 [-], 855	Similar to positive transcriptional regulator MutR
33	rffD	941893..943188 [+], 1296	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
34	spr0962	943148..943798 [+], 651	Conserved hypothetical protein
35	spr0963	943808..944590 [+], 783	Hypothetical protein
36	spr0964	944613..946505 [+], 1893	Hypothetical protein
37	spr0965	946534..947640 [+], 1107	Hypothetical protein
38	spr0966	947648..948958 [+], 1311	Conserved hypothetical protein
39	spr0967	948960..950183 [+], 1224	Conserved hypothetical protein
40	spr0968	950173..951123 [+], 951	Hypothetical protein
41	nikS	951138..952337 [+], 1200	Nikkomycin biosynthesis protein, carboxylase
42	spr0970	952356..953000 [+], 645	Conserved hypothetical protein
43	mefE	953383..954594 [+], 1212	ABC transporter membrane-spanning permease - macrolide efflux
44	spr0972	955253..955474 [+], 222	Conserved hypothetical protein
45	ftsW	956376..957605 [+], 1230	Cell division protein FtsW
46	ppc	957625..960321 [+], 2697	Phosphoenolpyruvate carboxylase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	40	Fasta

(1) Croucher NJ; Walker D; Romero P; Lennard N; Paterson GK; Bason NC; Mitchell AM; Quail MA; Andrew PW; Parkhill J; Bentley SD; Mitchell TJ (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PubMed:19114491]