ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	432
Name	ICESpnD39-1
Organism	Streptococcus pneumoniae D39
Size (bp)	36386
GC content [Genome] (%)	31.55[39.71]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	CP000410 (complete ICE sequence in this genome)
Replicon	chromosome (2046115 bp, BioProject:16374) [NC_008533]
Genome coordinates	926620..963005
Putative oriT region	-
Putative relaxase	coordinates: 946388..947005; Locus tag: SPD_0936; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of ICESpnD39-1 is not available.

The graph information of ICESpnD39-1 components from CP000410

Complete gene list of ICESpnD39-1 from CP000410
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SPD_0911	922047..923054 [+], 1008	conserved hypothetical protein
2	pvaA	923054..923668 [+], 615	pneumococcal vaccine antigen A
3	SPD_0913	923742..924716 [+], 975	conserved hypothetical protein
4	rumA-1	924790..926421 [+], 1632	23S rRNA (uracil-5-)-methyltransferase RumA
5	SPD_0915	927770..928795 [+], 1026	iron-compound ABC transporter, iron compound-binding protein
6	SPD_0916	928785..929792 [+], 1008	iron-compound ABC transporter, permease protein
7	SPD_0917	929792..930799 [+], 1008	iron-compound ABC transporter, permease protein
8	SPD_0918	930799..931593 [+], 795	iron-compound ABC transporter, ATP-binding protein
9	SPD_0919	932495..932650 [+], 156	conserved hypothetical protein
10	SPD_0920	933334..933495 [+], 162	conserved hypothetical protein
11	SPD_0921	933587..935266 [+], 1680	site-specific recombinase, resolvase family protein	Integrase
12	SPD_0922	935489..936100 [+], 612	conserved hypothetical protein
13	SPD_0923	936413..936610 [+], 198	conserved hypothetical protein
14	SPD_0924	936672..937487 [+], 816	conserved hypothetical protein
15	SPD_0925	937487..938341 [+], 855	hydrolase, putative
16	SPD_0926	938453..939337 [+], 885	conserved hypothetical protein TIGR00147
17	nplT	939476..941239 [+], 1764	Neopullulanase
18	SPD_0928	941325..941642 [+], 318	conserved hypothetical protein
19	SPD_0929	941688..941969 [+], 282	conserved hypothetical protein
20	SPD_0930	942414..942890 [+], 477	transcriptional regulator, putative
21	SPD_0931	942890..943651 [+], 762	conserved hypothetical protein
22	SPD_0932	943679..944455 [+], 777	conserved hypothetical protein
23	SPD_0933	944383..944835 [+], 453	conserved hypothetical protein
24	SPD_0934	945667..946026 [+], 360	Tn5252, Orf 10 protein
25	SPD_0935	946036..946365 [+], 330	Tn5252, Orf 9 protein
26	SPD_0936	946388..947005 [+], 618	Tn5252, relaxase	Relaxase, MOB_P Family
27	SPD_0938	947686..948273 [+], 588	conserved hypothetical protein
28	SPD_0939	948318..949172 [-], 855	transcriptional activator, Rgg/GadR/MutR family protein
29	SPD_0940	949424..950719 [+], 1296	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, putative
30	SPD_0941	950721..951329 [+], 609	conserved hypothetical protein
31	SPD_0942	951339..952121 [+], 783	conserved hypothetical protein
32	SPD_0943	952144..954036 [+], 1893	conserved hypothetical protein
33	SPD_0944	954065..955171 [+], 1107	conserved hypothetical protein
34	SPD_0945	955179..956489 [+], 1311	AMP-binding enzyme, putative
35	SPD_0946	956491..957714 [+], 1224	conserved hypothetical protein
36	SPD_0947	957719..958654 [+], 936	membrane protein, putative
37	SPD_0948	958669..959868 [+], 1200	conserved hypothetical protein
38	SPD_0949	959932..960531 [+], 600	bacterial transferase hexapeptide (three repeats), putative
39	SPD_0950	960914..962125 [+], 1212	transporter, major facilitator family protein
40	SPD_0951	962784..963005 [+], 222	conserved hypothetical protein
41	SPD_0952	963907..965136 [+], 1230	cell division protein FtsW, putative
42	ppc	965156..967852 [+], 2697	phosphoenolpyruvate carboxylase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	36	Fasta

(1) Croucher NJ; Walker D; Romero P; Lennard N; Paterson GK; Bason NC; Mitchell AM; Quail MA; Andrew PW; Parkhill J; Bentley SD; Mitchell TJ (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PubMed:19114491]