ICEberg
I. Information of ICE
ICEberg ID422
Name ICEMmysMmYCp235 This is a putative ICE identified in this study by Blast
OrganismSynthetic Mycoplasma mycoides JCVI-syn1.0 clone sMmYCp235-1
Size (bp)30217
GC content [Genome] (%)23.66[24]
Insertion siteMMSYN1_0551
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002027 (complete ICE sequence in this genome)
Replicon[CP002027]
Genome coordinates662147..692363 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMmysMmYCp235 is not available.



The graph information of ICEMmysMmYCp235 components from CP002027
Complete gene list of ICEMmysMmYCp235 from CP002027
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1MMSYN1_0551659874..662378 [+], 2505putative liporotein
2MMSYN1_0552662695..663483 [+], 789conserved hypothetical integrative conjugal element protein
3MMSYN1_0553663752..664993 [+], 1242conserved hypothetical integrative conjugal element protein
4MMSYN1_0554665166..665999 [+], 834C-5 cytosine-specific DNA methylase
5MMSYN1_0555666028..668043 [+], 2016membrane protein, putative (TraD/TraG family)T4CP 
6MMSYN1_0556668059..669015 [+], 957conserved hypothetical integrative conjugal element protein
7MMSYN1_0557668999..669916 [+], 918conserved hypothetical integrative conjugal element protein
8MMSYN1_0558669931..670347 [+], 417single-strand binding family protein
9MMSYN1_0559670612..671802 [+], 1191conserved hypothetical integrative conjugal element protein
10MMSYN1_0560672040..673572 [+], 1533putative liporotein
11MMSYN1_0561673574..673765 [+], 192conserved hypothetical integrative conjugal element protein
12MMSYN1_0562673862..674092 [+], 231conserved hypothetical integrative conjugal element protein
13MMSYN1_0563674120..676843 [+], 2724putative membrane protein
14MMSYN1_0564676950..677135 [+], 186conserved hypothetical integrative conjugal element protein
15MMSYN1_0565677225..677602 [+], 378conserved hypothetical integrative conjugal element protein
16MMSYN1_0567679556..682399 [+], 2844putative membrane protein
17MMSYN1_0568682412..683077 [+], 666conserved hypothetical integrative conjugal element protein
18MMSYN1_0569683124..688091 [+], 4968putative membrane protein
19MMSYN1_0570688547..689293 [+], 747conserved hypothetical integrative conjugal element protein
20MMSYN1_0571689489..689854 [+], 366conserved hypothetical integrative conjugal element protein
21MMSYN1_0572690078..690992 [+], 915CobQ/CobB/MinD/ParA nucleotide binding domain, putative
22MMSYN1_0573691042..692274 [+], 1233conserved hypothetical integrative conjugal element protein
23MMSYN1_0574692861..695401 [+], 2541putative liporotein
24atpD_1695457..696836 [-], 1380ATP synthase F1, beta subunit
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Gibson DG; Glass JI; Lartigue C; Noskov VN; Chuang RY; Algire MA; Benders GA; Montague MG; Ma L; Moodie MM; Merryman C; Vashee S; Krishnakumar R; Assad-Garcia N; Andrews-Pfannkoch C; Denisova EA; Young L; Qi ZQ; Segall-Shapiro TH; Calvey CH; Parmar PP; Hutchison CA 3rd; Smith HO; Venter JC (2010). Creation of a bacterial cell controlled by a chemically synthesized genome. Science. 329(5987):52-6. [PubMed:20488990]
(2) Identified as part of this study from CP002027
 

Genomics & Bioinformatics Group in MML, SJTU