ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	412
Name	Tn1806
Organism	Streptococcus pneumoniae AP200
Size (bp)	51457
GC content [Genome] (%)	30.98[39.51]
Insertion site	Type I restriction modification system
Function	tetronasin resistance
Species that ICE can be transferred to	-
Nucleotide Sequence	CP002121 (complete ICE sequence in this genome)
Replicon	[NC_014494]
Genome coordinates	818751..870207
Putative oriT region	-
Putative relaxase	coordinates: 860132..861472; Locus tag: SPAP_0900; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of Tn1806 is not available.

The graph information of Tn1806 components from CP002121

Complete gene list of Tn1806 from CP002121
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SPAP_0859	814885..815457 [+], 573	Predicted hydrolase of the alpha/beta superfamily
2	SPAP_0860	815720..816055 [+], 336	Uncharacterized protein conserved in bacteria
3	SPAP_0861	816052..816459 [+], 408	Uncharacterized protein conserved in bacteria
4	SPAP_0862	816472..817638 [+], 1167	hypothetical protein
5	SPAP_0863	818146..818859 [+], 714	Type I restriction-modification system methyltransferase subunit
6	SPAP_0864	818937..819182 [+], 246	hypothetical protein
7	SPAP_0865	819264..820037 [+], 774	hypothetical protein
8	SPAP_0866	820034..820861 [+], 828	DNA replication protein
9	SPAP_0867	820854..821339 [+], 486	hypothetical protein
10	SPAP_0868	821336..822070 [+], 735	Uncharacterized phage-encoded protein
11	SPAP_0869	822048..823859 [+], 1812	type IV secretory pathway protein VirD4
12	SPAP_0870	823942..824412 [+], 471	Predicted transcriptional regulator
13	SPAP_0871	824681..824875 [+], 195	hypothetical protein
14	SPAP_0872	824939..825457 [+], 519	Uncharacterized conserved protein
15	SPAP_0873	825495..825917 [+], 423	hypothetical protein
16	SPAP_0874	825985..826602 [+], 618	hypothetical protein
17	SPAP_0875	826824..827135 [+], 312	hypothetical protein
18	SPAP_0876	827137..827352 [+], 216	hypothetical protein
19	SPAP_0877	827363..828226 [+], 864	hypothetical protein
20	SPAP_0878	828236..828526 [+], 291	hypothetical protein
21	SPAP_0879	828528..828938 [+], 411	hypothetical protein
22	SPAP_0880	828829..831252 [+], 2424	Type IV secretory pathway, VirB4 component	PrgJ, T4SS component
23	SPAP_0881	831260..833839 [+], 2580	Cell wall-associated hydrolases (invasion-associated proteins)	Orf14_Tn, T4SS component
24	SPAP_0882	833854..834093 [+], 240	hypothetical protein
25	SPAP_0883	834080..835663 [+], 1584	hypothetical protein
26	SPAP_0884	835678..836544 [+], 867	hypothetical protein
27	SPAP_0885	836656..837231 [+], 576	hypothetical protein
28	SPAP_0886	837224..838207 [+], 984	hypothetical protein
29	SPAP_0887	838300..840021 [+], 1722	Topoisomerase IA
30	SPAP_0888	840014..840979 [+], 966	Site-specific DNA methylase
31	SPAP_0889	840966..847262 [+], 6297	DNA methylase
32	SPAP_0890	847818..849353 [+], 1536	Retron-type reverse transcriptase
33	SPAP_0891	850994..851650 [+], 657	hypothetical protein
34	SPAP_0892	852209..852835 [+], 627	Transcriptional regulator
35	SPAP_0893	852920..853801 [+], 882	ABC-type multidrug transport system, ATPase component
36	SPAP_0894	853734..855440 [+], 1707	tetronasin resistance transmembrane protein
37	SPAP_0895	856021..856227 [-], 207	hypothetical protein
38	erm(TR)	856174..856905 [+], 732	Dimethyladenosine transferase (rRNA methylation)
39	SPAP_0897	857122..857646 [+], 525	hypothetical protein
40	SPAP_0898	858667..859092 [+], 426	hypothetical protein
41	SPAP_0899	859297..859650 [+], 354	hypothetical protein
42	SPAP_0900	860132..861472 [-], 1341	Type IV secretory pathway, VirD2 components (relaxase)	Relaxase, MOB_P Family
43	SPAP_0901	861465..861821 [-], 357	hypothetical protein
44	SPAP_0902	862000..862335 [-], 336	hypothetical protein
45	SPAP_0903	862328..862561 [-], 234	hypothetical protein
46	SPAP_0904	862668..863150 [-], 483	hypothetical protein
47	SPAP_0905	863159..863707 [-], 549	Predicted Zn peptidase
48	SPAP_0906	863716..864117 [-], 402	hypothetical protein
49	SPAP_0907	864267..864827 [+], 561	hypothetical protein
50	SPAP_0908	865097..865507 [+], 411	hypothetical protein
51	SPAP_0909	865984..866205 [+], 222	hypothetical protein
52	SPAP_0910	866306..867976 [+], 1671	site-specific recombinase	Integrase
53	SPAP_0911	867976..869646 [+], 1671	site-specific recombinase
54	SPAP_0912	869639..871132 [+], 1494	site-specific recombinase
55	SPAP_0913	871308..872099 [+], 792	Type I restriction-modification system methyltransferase subunit
56	SPAP_0914	872112..872654 [+], 543	Restriction endonuclease S subunit
57	SPAP_0915	872651..873238 [+], 588	Restriction endonuclease S subunit
58	SPAP_0916	873298..873534 [+], 237	hypothetical protein
59	SPAP_0917	873531..873944 [+], 414	Prophage maintenance system killer protein
60	SPAP_0918	874062..875027 [+], 966	Integrase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	48	Fasta

(1) Camilli R; Del Grosso M; Iannelli F; Pantosti A (2008). New genetic element carrying the erythromycin resistance determinant erm(TR) in Streptococcus pneumoniae. Antimicrob Agents Chemother. 52(2):619-25. [PubMed:18070957]