 ICEberg ID | 41 |
Name  | ICEPmiJpn1  |
| ICEO ID | ICEO_0000596 |
| Organism | Proteus mirabilis TUM4660 |
| Size (bp) | - |
| GC content [Genome] (%) | - |
| Insertion site | prfC |
| Function | Antibiotic resistance genes: blaCMY-2 |
| Species that ICE can be transferred to | Escherichia coli; Klebsiella pneumoniae; Salmonella enterica serovar Typhimurium; Citrobacter koseri |
| Nucleotide Sequence | AB525688; AB525230; AB525229; AB525228; AB525227; AB525226; AB525225 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICEPmiJpn1 components from AB525230 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525230 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | prfC | 316..422 [+], 107 | peptide chain release factor 3 | ||
The graph information of ICEPmiJpn1 components from AB525229 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525229 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | traG | 1..197 [+], 197 | sex pilus assembly protein | TraG_F, T4SS component | |
| 2 | eexS | 230..661 [-], 432 | EexS protein | ||
| 3 | setC | 716..1012 [-], 297 | transcriptional activator | ||
The graph information of ICEPmiJpn1 components from AB525228 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525228 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | s073 | 1..662 [+], 662 | hypothetical protein | ||
| 2 | jpn03 | 682..2325 [+], 1644 | hypothetical protein | ||
| 3 | jpn04 | 2329..3756 [+], 1428 | hypothetical protein | ||
| 4 | traF | 3997..4328 [+], 332 | sex pilus assembly protein | TraF_F, T4SS component | |
The graph information of ICEPmiJpn1 components from AB525227 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525227 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | traN | 1..53 [+], 53 | TraN | ||
| 2 | orf64 | 647..1309 [+], 663 | hypothetical protein | ||
| 3 | orf65 | 1400..1487 [-], 88 | hypothetical protein | ||
The graph information of ICEPmiJpn1 components from AB525226 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525226 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | s052 | 196..1029 [+], 834 | hypothetical protein | ||
| 2 | s053 | 1022..1960 [+], 939 | ync protein | ||
The graph information of ICEPmiJpn1 components from AB525225 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525225 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | orf36 | 1..72 [+], 72 | hypothetical protein | ||
| 2 | orf37 | 99..686 [-], 588 | hypothetical protein | ||
| 3 | traL | 974..1056 [+], 83 | TraL | TraL_F, T4SS component | |
The graph information of ICEPmiJpn1 components from AB525688 | |||||
 | |||||
| Incomplete gene list of ICEPmiJpn1 from AB525688 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | prfC | 179..271 [+], 93 | peptide chain release factor 3 | ||
| 2 | - | 365..688 [-], 324 | hypothetical protein | ||
| 3 | - | 1036..1356 [+], 321 | hypothetical protein | ||
| 4 | - | 1349..2563 [+], 1215 | hypothetical protein | ||
| 5 | xis | 2774..2974 [+], 201 | Xis | ||
| 6 | int | 2991..4232 [-], 1242 | Int | Integrase | |
| 7 | - | 4234..4503 [-], 270 | hypothetical protein | ||
| 8 | - | 4506..5480 [-], 975 | hypothetical protein | ||
| 9 | - | 5585..5791 [-], 207 | hypothetical protein | ||
| 10 | - | 6190..6360 [-], 171 | hypothetical protein | ||
| 11 | rumB | 6399..7706 [-], 1308 | RumB | ||
| 12 | rumA | 7675..8124 [-], 450 | RumA | ||
| 13 | - | 8652..8969 [-], 318 | hypothetical protein | ||
| 14 | - | 8764..9672 [+], 909 | hypothetical protein | ||
| 15 | - | 9746..9946 [+], 201 | hypothetical protein | ||
| 16 | Tn10L | 9956..11164 [-], 1209 | transposase | ||
| 17 | bla | 12265..13410 [+], 1146 | beta-lactamase (CMY-2) | AR | |
| 18 | blc | 13504..14037 [+], 534 | outer membrane lipoprotein Blc | ||
| 19 | sugE | 14034..14351 [-], 318 | quaternary ammonium compound-resistance protein SugE | ||
| 20 | ecnR | 14608..15033 [+], 426 | entericidin R | ||
| 21 | jpn01 | 15067..20565 [+], 5499 | hypothetical protein | ||
| 22 | dsbC | 20714..21421 [+], 708 | DsbC | TrbB_I, T4SS component | |
| 23 | traC | 21418..22125 [+], 708 | TraC | TraC_F, T4SS component | |
| 24 | Tn10R | 22926..24134 [-], 1209 | transposase | ||
| 25 | - | 24437..25363 [+], 927 | hypothetical protein | ||
| 26 | - | 25969..26553 [+], 585 | hypothetical protein | ||
| 27 | - | 26572..30249 [+], 3678 | hypothetical protein | ||
| 28 | jpn02 | 30406..34023 [+], 3618 | hypothetical protein | ||
| 29 | - | 34023..36692 [+], 2670 | hypothetical protein | ||
| 30 | - | 36705..38945 [+], 2241 | hypothetical protein | ||
| 31 | - | 38989..41640 [+], 2652 | hypothetical protein | ||
| 32 | traI | 41795..41922 [+], 128 | TraI | ||
|
(1) Mata C; Navarro F; Miro E; Walsh TR; Mirelis B; Toleman M (2011). Prevalence of SXT/R391-like integrative and conjugative elements carrying blaCMY-2 in Proteus mirabilis. J Antimicrob Chemother. 66(10):2266-70. [PubMed:21752830]
|
|
(2) Harada S; Ishii Y; Saga T; Tateda K; Yamaguchi K (2010). Chromosomally encoded blaCMY-2 located on a novel SXT/R391-related integrating conjugative element in a Proteus mirabilis clinical isolate. Antimicrob Agents Chemother. 54(9):3545-50. [PubMed:20566768]
|
| experimental literature |