ICEberg
I. Information of ICE
ICEberg ID402
Name CTn6 This is a predicted ICE derived from literature
OrganismClostridium difficile 630
Size (bp)19368
GC content [Genome] (%)44.03
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM180355 (complete ICE sequence in this genome)
Replicon chromosome (4290252 bp, BioProject:78) [NC_009089]
Genome coordinates3890925..3910292 
Putative oriT region -
Putative relaxase coordinates: 3906771..3907751; Locus tag: CD630_33430;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of CTn6 is not available.



The graph information of CTn6 components from AM180355
Complete gene list of CTn6 from AM180355
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1CD630_332103886720..3887349 [+], 630conserved hypothetical protein
2CD630_332203887417..3888250 [+], 834conserved hypothetical protein
3CD630_332303888356..3888931 [-], 576conserved hypothetical protein
4CD630_332403889224..3889502 [-], 279conserved hypothetical protein
5CD630_332503889811..3890572 [-], 762conserved hypothetical protein
6CD630_332603890925..3892109 [-], 1185Integrase, lambdoid phage family Tn916-like,CTn6-Orf1Integrase 
7CD630_332703892146..3892340 [-], 195putative conjugative transposon protein Tn916-like, CTn6-Orf2
8CD630_332713892478..3892774 [+], 297putative conjugative transposon protein Tn916-like, CTn6-Orf3
9CD630_332803892914..3893153 [-], 240putative conjugative transposon protein Tn916-like, CTn6-Orf4
10CD630_332903893150..3893572 [-], 423putative RNA polymerase sigma factor Tn916-like, CTn6-Orf5
11CD630_333003894170..3894526 [+], 357Transcriptional regulator, HTH-type Tn916-like,CTn6-Orf6
12CD630_333103894559..3895254 [-], 696putative conjugative transposon protein Tn916-like, CTn6-Orf7
13CD630_333203895434..3896003 [+], 570Transcriptional regulator, TetR family; Tn916-like, CTn6-Orf8
14CD630_333303896015..3896260 [+], 246putative conjugative transposon protein Tn916-like, CTn6-Orf9
15CD630_333313896491..3896733 [+], 243putative conjugative transposon protein Tn916-like, CTn6-Orf10
16CD630_333403896730..3897200 [+], 471putative transcriptional regulator Tn916-like,CTn6-Orf11
17CD630_333503897502..3898410 [-], 909putative conjugative transposon protein Tn916-like, CTn6-Orf12Orf13_Tn, T4SS component 
18CD630_333603898427..3899431 [-], 1005putative cell wall hydrolase Tn916-like,CTn6-Orf13Orf14_Tn, T4SS component 
19CD630_333703899428..3901809 [-], 2382putative membrane protein Tn916-like,CTn6-Orf14Orf15_Tn, T4SS component 
20CD630_333803901806..3904259 [-], 2454putative ATPase Tn916-like, CTn6-Orf15Orf16_Tn, T4SS component 
21CD630_333903904243..3904635 [-], 393putative conjugative transposon protein Tn916-like, CTn6-Orf16Orf17_Tn, T4SS component 
22CD630_334003904725..3905222 [-], 498putative antirestriction protein Tn916-like,CTn6-Orf17
23CD630_334103905328..3905732 [-], 405Fragment of putative conjugative transposon protein Tn916-like, CTn6-Orf18 (N-terminal region)
24CD630_334203905806..3906312 [-], 507putative conjugative transposon protein Tn916-like, CTn6-Orf19
25CD630_334213906498..3906719 [-], 222putative conjugative transposon protein Tn916-like, CTn6-Orf20Orf19_Tn, T4SS component 
26CD630_334303906771..3907751 [-], 981putative replication initiation factor Tn916-like, CTn6-Orf21Relaxase, MOBT Family
27CD630_334403908146..3909543 [-], 1398putative cell-division FtsK/SpoIIIE-family protein Tn916-like, CTn6-Orf22Orf21_Tn, T4SS component 
28CD630_334503909579..3909956 [-], 378putative conjugative transposon protein Tn916-like, CTn6-Orf23
29CD630_334603909978..3910292 [-], 315putative conjugative transposon protein DUF961 family Tn916-like, CTn6-Orf24
30CD630_334703910549..3911223 [+], 675putative membrane protein
31CD630_334803911224..3912117 [+], 894Hypothetical protein
32bclA33912316..3914301 [-], 1986Exosporium glycoprotein BclA3
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PubMed:16804543]
 

Genomics & Bioinformatics Group in MML, SJTU