ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	401
Name	CTn5
Organism	Clostridium difficile 630
Size (bp)	43503
GC content [Genome] (%)	32.7
Insertion site	CD630_18440
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM180355 (complete ICE sequence in this genome)
Replicon	chromosome (4290252 bp, BioProject:78) [NC_009089]
Genome coordinates	2137789..2181291
Putative oriT region	-
Putative relaxase	coordinates: 2170086..2171417; Locus tag: CD630_18690; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of CTn5 is not available.

The graph information of CTn5 components from AM180355

Complete gene list of CTn5 from AM180355
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	CD630_18420	2134424..2135170 [+], 747	conserved hypothetical protein, DUF218 family
2	CD630_18430	2135119..2135427 [-], 309	conserved hypothetical protein
3	CD630_18440	2136229..2185930 [+], 49702	Fragment of conserved hypothetical protein
4	CD630_18441	2137462..2137770 [+], 309	Fragment of putative methyltransferase (N-terminal region)
5	CD630_18450	2137789..2138070 [+], 282	putative membrane protein Tn1549-like,CTn5-Orf1
6	CD630_18460	2138111..2138629 [+], 519	putative conjugative transposon protein Tn1549-like, CTn5-Orf2
7	CD630_18470	2138730..2139740 [+], 1011	putative conjugative transposon protein Tn1549-like, CTn5-Orf3
8	CD630_18480	2139742..2140227 [+], 486	putative conjugative transposon protein Tn1549-like, CTn5-Orf4	Integrase
9	CD630_18490	2140266..2142005 [+], 1740	putative conjugative transfer protein Tn1549-like, CTn5-Orf5
10	CD630_18500	2142169..2143035 [+], 867	Transcriptional regulator, AraC family; Tn1549-like, CTn5-Orf6
11	CD630_18510	2143244..2143555 [+], 312	putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf7
12	CD630_18520	2143559..2143774 [+], 216	putative conjugative transposon protein Tn1549-like, CTn5-Orf8
13	CD630_18530	2143794..2144657 [+], 864	putative membrane protein Tn1549-like,CTn5-Orf9
14	CD630_18540	2144675..2144935 [+], 261	putative conjugative transposon protein Tn1549-like, CTn5-Orf10
15	CD630_18550	2144939..2145328 [+], 390	putative conjugative transposon protein Tn1549-like, CTn5-Orf11
16	CD630_18560	2145240..2147669 [+], 2430	putative hydrolase Tn1549-like, CTn5-Orf12	PrgJ, T4SS component
17	CD630_18570	2147674..2149836 [+], 2163	putative cell wall hydrolase Tn1549-like,CTn5-Orf13	Orf14_Tn, T4SS component
18	CD630_18571	2149848..2150081 [+], 234	putative conjugative transposon protein Tn1549-like, CTn5-Orf14
19	CD630_18580	2150071..2151642 [+], 1572	putative cell surface protein Tn1549-like,CTn5-Orf15
20	CD630_18590	2151738..2153444 [+], 1707	DNA topoisomerase protein, type IA,Tn1549-like, CTn5-Orf16
21	CD630_18591	2153528..2153713 [+], 186	Transcriptional regulator, AbrB family; Tn1549-like, CTn5-Orf17
22	CD630_18600	2153747..2154793 [+], 1047	putative conjugative transposon protein DUF1016 family, Tn1549-like, CTn5-Orf18
23	CD630_18610	2154904..2155710 [+], 807	putative conjugative transposon protein Tn1549-like, CTn5-Orf19
24	CD630_18620	2155823..2164804 [+], 8982	putative DNA/RNA helicase Tn1549-like,CTn5-Orf21
25	CD630_18630	2164847..2165506 [+], 660	putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf22
26	CD630_18640	2165646..2165876 [+], 231	Transcriptional regulator, HTH-type Tn1549-like, CTn5-Orf23
27	CD630_18650	2166079..2167701 [+], 1623	putative DNA recombination protein Tn1549-like,CTn5-Orf24
28	CD630_18660	2167698..2168765 [+], 1068	putative conjugative transposon protein tn1549-like, CTn5-Orf25
29	CD630_18670	2168793..2169254 [+], 462	putative conjugative transposon protein Tn1549-like, CTn5-Orf26
30	CD630_18680	2169244..2170050 [+], 807	putative conjugative transposon protein Tn1549-like, CTn5-Orf27
31	CD630_18690	2170086..2171417 [-], 1332	putative endonuclease relaxase Tn1549-like,CTn5-Orf28	Relaxase, MOB_P Family
32	CD630_18700	2171423..2171773 [-], 351	putative conjugative transposon protein Tn1549-like, CTn5-Orf29
33	CD630_18710	2172097..2173254 [+], 1158	putative oxidoreductase Tn1549-like,CTn5-Orf30
34	CD630_18711	2173276..2173428 [+], 153	putative conjugative transposon protein Tn1549-like, CTn5-Orf31
35	CD630_18720	2173421..2174311 [+], 891	putative iron-sulfur binding protein Tn1549-like, CTn5-Orf32
36	vexP1	2174330..2175607 [+], 1278	ABC-type transport system, permease Tn1549-like, CTn5-Orf33
37	vexP2	2175617..2176273 [+], 657	ABC-type transport system, ATP-binding protein Tn1549-like, CTn5-Orf34
38	vexP3	2176273..2177649 [+], 1377	ABC-type transport system, permease Tn1549-like, CTn5-Orf35
39	vncR	2177747..2178400 [+], 654	Two-component response regulator; Tn1549-like,CTn5-Orf36
40	vncS	2178397..2179716 [+], 1320	Two-component sensor histidine kinase; Tn154c-like, CTn5-Orf37
41	CD630_18780	2180240..2180650 [+], 411	putative sigma factor Tn1549-like, CTn5-Orf38
42	CD630_18782	2181139..2181291 [+], 153	putative conjugative transposon protein Tn1549-like, CTn5-Orf39
43	CD630_18440	2136229..2185930 [+], 49702	Fragment of conserved hypothetical protein
44	CD630_18781	2181392..2183038 [+], 1647	Fragment of conserved hypothetical protein (N-terminal region)

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	38	Fasta

(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PubMed:16804543]