I. Information of ICE

ICEberg ID	397
Name	ICEHpyP12-2
Organism	Helicobacter pylori P12
Size (bp)	30635
GC content [Genome] (%)	32.88[38.81]
Insertion site	type II R-M system methyltransferase (HPP12_1319)
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	CP001217 (complete ICE sequence in this genome)
Replicon	chromosome (1673813 bp, BioProject:32291) [NC_011498]
Genome coordinates	1394776..1425410
Putative oriT region	-
Putative relaxase	-

II. ICE interaction with IME/CIME/

The interaction information of ICEHpyP12-2 is not available.

The graph information of ICEHpyP12-2 components from CP001217
Complete gene list of ICEHpyP12-2 from CP001217
#	Gene	Coordinates [+/-], size (bp)	Product  (GenBank annotation)	*Reannotation
1	HPP12_1314	1389854..1390261 [-], 408	type II R-M system restriction endonuclease
2	HPP12_1315	1390306..1390851 [-], 546	hypothetical protein
3	HPP12_1316	1390860..1390988 [-], 129	hypothetical protein
4	HPP12_1317	1391041..1391214 [-], 174	hypothetical protein
5	HPP12_1318	1391189..1391668 [-], 480	hypothetical protein
6	HPP12_1320	1394833..1395621 [+], 789	hypothetical protein
7	HPP12_1321	1395624..1395854 [+], 231	hypothetical protein
8	HPP12_1322	1395847..1396335 [+], 489	hypothetical protein
9	virB2-2	1396323..1396607 [+], 285	VirB2 type IV secretion protein	VirB2, T4SS component
10	virB3-2	1396619..1396882 [+], 264	VirB3 type IV secretion protein	VirB3, T4SS component
11	HPP12_1325	1396894..1397130 [+], 237	hypothetical protein
12	virB4-2	1397130..1399706 [+], 2577	VirB4 type IV secretion ATPase	VirB4, T4SS component
13	virB7-2	1399703..1399843 [+], 141	VirB7 type IV secretion protein	VirB7, T4SS component
14	virB8-2	1399836..1400972 [+], 1137	VirB8 type IV secretion protein	VirB8, T4SS component
15	virB9-2	1400969..1402624 [+], 1656	VirB9 type IV secretion protein	VirB9, T4SS component
16	virB10-2	1402591..1403829 [+], 1239	VirB10 type IV secretion protein	VirB10, T4SS component
17	HPP12_1331	1403813..1405597 [+], 1785	hypothetical protein
18	HPP12_1332	1405501..1406055 [+], 555	hypothetical protein
19	HPP12_1333	1406068..1407030 [+], 963	hypothetical protein
20	HPP12_1334	1407047..1407322 [+], 276	hypothetical protein
21	virB11-3	1407327..1408271 [+], 945	VirB11 type IV secretion ATPase	VirB11, T4SS component
22	HPP12_1336	1408268..1408786 [+], 519	hypothetical protein
23	virD4-2	1408783..1411026 [+], 2244	VirD4 coupling protein	VirD4, T4SS component
24	HPP12_1339	1413163..1413633 [+], 471	hypothetical protein
25	HPP12_1340	1413603..1414406 [+], 804	hypothetical protein
26	HPP12_1341	1414480..1415145 [-], 666	hypothetical protein
27	HPP12_1342	1415123..1415401 [-], 279	hypothetical protein
28	HPP12_1343	1415334..1415765 [-], 432	hypothetical protein
29	HPP12_1344	1415750..1416160 [+], 411	hypothetical protein
30	HPP12_1345	1416165..1416794 [-], 630	hypothetical protein
31	HPP12_1346	1416897..1417178 [-], 282	hypothetical protein
32	HPP12_1347	1417399..1417788 [+], 390	hypothetical protein
33	HPP12_1348	1417796..1418086 [+], 291	hypothetical protein
34	HPP12_1349	1418215..1418466 [+], 252	hypothetical protein
35	HPP12_1350	1418394..1419248 [+], 855	hypothetical protein
36	HPP12_1352	1421131..1421259 [+], 129	hypothetical protein
37	virD2-2	1421785..1423818 [-], 2034	relaxase
38	nadC	1425436..1426257 [-], 822	nicotinate-nucleotide pyrophosphorylase
39	nadA	1426257..1427267 [-], 1011	quinolinate synthetase A
40	psd	1427257..1428060 [-], 804	phosphatidylserine decarboxylase proenzyme
41	HPP12_1357	1428054..1428560 [-], 507	hypothetical protein
42	HPP12_1358	1428573..1429124 [-], 552	hypothetical protein
43	ubiA	1429060..1429944 [-], 885	4-hydroxybenzoate octaprenyltransferase

Flanking regions

(1) Fischer W; Windhager L; Rohrer S; Zeiller M; Karnholz A; Hoffmann R; Zimmer R; Haas R (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PubMed:20478826]