ICEberg
I. Information of ICE
ICEberg ID395
Name TnSmu1 This is a predicted ICE derived from literature
OrganismStreptococcus mutans UA159
Size (bp)14836
GC content [Genome] (%)33.96
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE014133 (complete ICE sequence in this genome)
Replicon[AE014133]
Genome coordinates192029..206864 
Putative oriT region -
Putative relaxase coordinates: 203232..204464; Locus tag: SMU_207c;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of TnSmu1 is not available.



The graph information of TnSmu1 components from AE014133
Complete gene list of TnSmu1 from AE014133
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SMU_191c192029..193192 [-], 1164putative integraseIntegrase 
2SMU_193c193199..193384 [-], 186conserved hypothetical protein
3SMU_194c193388..193639 [-], 252conserved hypothetical protein; Bacteriophage P2 associated
4SMU_195c193675..193935 [-], 261hypothetical protein
5SMU_196c193953..195050 [-], 1098putative transfer proteinOrf13_p, T4SS component 
6SMU_197c195072..197498 [-], 2427hypothetical proteinYddG, T4SS component 
7SMU_198c197498..200041 [-], 2544putative conjugative transposon proteinYddE, T4SS component 
8SMU_199c200061..200441 [-], 381hypothetical proteinYddD, T4SS component 
9SMU_200c200470..200697 [-], 228hypothetical protein
10SMU_201c200710..201690 [-], 981putative transposon proteinYddB, T4SS component 
11SMU_202c201706..202179 [-], 474hypothetical protein
12SMU_204c202302..202430 [-], 129hypothetical protein
13SMU_205c202493..202765 [-], 273hypothetical protein
14SMU_206c202868..203269 [-], 402hypothetical protein
15SMU_207c203232..204464 [-], 1233putative transposon proteinRelaxase, MOBT Family
16SMU_208c204699..206423 [-], 1725putative transposon protein; possible DNA segregation ATPaseYdcQ, T4SS component 
17SMU_209c206439..206864 [-], 426hypothetical protein
18SMU_210c206888..207199 [-], 312hypothetical protein
19SMU_211c207419..207862 [-], 444hypothetical protein
20SMU_212c207865..208113 [-], 249hypothetical protein
21SMU_213c208136..208327 [-], 192hypothetical protein
22SMU_214c208355..208663 [-], 309hypothetical protein
23SMU_215c208672..208872 [-], 201hypothetical protein
24SMU_216c208952..209266 [-], 315hypothetical protein
25SMU_217c209386..209913 [-], 528hypothetical protein
26SMU_218210660..211013 [+], 354putative transcriptional regulator
27SMU_219211020..211451 [+], 432hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Ajdic D; McShan WM; McLaughlin RE; Savic G; Chang J; Carson MB; Primeaux C; Tian R; Kenton S; Jia H; Lin S; Qian Y; Li S; Zhu H; Najar F; Lai H; White J; Roe BA; Ferretti JJ (2002). Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc Natl Acad Sci U S A. 99(22):14434-9. [PubMed:12397186]
 

Genomics & Bioinformatics Group in MML, SJTU